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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS11820 [old locus tag: NWMN_2047 ]
  • pan locus tag?: SAUPAN005440000
  • symbol: NWMN_RS11820
  • pan gene symbol?: manA
  • synonym:
  • product: mannose-6-phosphate isomerase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS11820 [old locus tag: NWMN_2047 ]
  • symbol: NWMN_RS11820
  • product: mannose-6-phosphate isomerase
  • replicon: chromosome
  • strand: -
  • coordinates: 2264475..2265413
  • length: 939
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2264475..2265413) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2047

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGCCATTATTTTTACAACCAATTTTAAAAACAAAATTATGGGGCGGTCAACGTCTAAGT
    GAGTTTGGATATCAATTAGACAATGATACAACTGGGGAATGTTGGTGTGTGTCAGCACAT
    CCAAATGGTACGAGCGAGATTATTAATGGACCATATCAAGGTCAAACATTAGACCGTATT
    TGGTCAGAACATCGTGAATTGTTTGGTGATTTCCCAAGCAAAGATTTTCCGCTTCTAACT
    AAAATAGTGGATGCAAGAGAATCACTTTCTATTCATGTGCACCCTGATAATTCTTATGCT
    TATGAGCATGAAAACGGGCAATATGGCAAATCTGAATGTTGGTATATTATAGATGCAGAA
    GAAGATGCAGAAATAGTTATAGGGACATTAGCAGAGTCTAGAGAAGAAGTTGCGAATCAT
    GTTCAACACGGAACGATAGAGTCGATACTTAGATATATTAAAGTAAAACCTGGAGAATTC
    TATTTTATTCCAGCAGGAACAGTACATACTATTTCTTCAGGAATATTAGCATACGAAACG
    ATGCAATCGTCAGACATTACATATAGACTTTATGATTTCAATCGTCAAGATAATCAATAT
    AATGATAGACCGTTAAATATTGAAAAAGCTTTAGACGTTATTCAGTACAATGCACCATTA
    CCTAATATTTTGCCTGAAAGCGAAATTATTGAAAACCATAAGTGTACACACATTGTATCG
    AATGATTTCTTTACATTGGTTAAATGGGAAATTTCTGGCACGTTAAATTATATGAAGCCT
    AGAGAGTTCTGTTTAGTTACAGTGTTGGAAGGCGAAGGGCAAATGATTGTCGATGGTGAA
    ATTTTCAAACTGACTACTGGTACAAACTTTATTTTGACTTCTGAAGATTTGGATAGTGTC
    TTTGAAGGTGATTTCACATTGATGATTAGCTATGTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    939

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS11820 [old locus tag: NWMN_2047 ]
  • symbol: NWMN_RS11820
  • description: mannose-6-phosphate isomerase
  • length: 312
  • theoretical pI: 4.32935
  • theoretical MW: 35642.7
  • GRAVY: -0.309295

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Sugars mannose-6-phosphate isomerase, class I (TIGR00218; EC 5.3.1.8; HMM-score: 192.7)
  • TheSEED: see NWMN_2047
  • PFAM:
    Cupin (CL0029) PMI_typeI_cat; Phosphomannose isomerase type I, catalytic domain (PF20511; HMM-score: 67.9)
    and 5 more
    MPI_cupin_dom; Mannose-6-phosphate isomerase, cupin domain (PF21621; HMM-score: 53.5)
    Cupin_2; Cupin domain (PF07883; HMM-score: 29.9)
    JmjC; JmjC domain, hydroxylase (PF02373; HMM-score: 17.6)
    AraC_binding; AraC-like ligand binding domain (PF02311; HMM-score: 15.6)
    no clan defined Thyroglobulin_1; Thyroglobulin type-1 repeat (PF00086; HMM-score: 11.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Zn2+
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.994
    • Cytoplasmic Membrane Score: 0.0017
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0043
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.099606
    • TAT(Tat/SPI): 0.001398
    • LIPO(Sec/SPII): 0.005526
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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