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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS10865 [old locus tag: NWMN_1888 ]
  • pan locus tag?: SAUPAN005048000
  • symbol: NWMN_RS10865
  • pan gene symbol?: —
  • synonym:
  • product: phage tail tape measure protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS10865 [old locus tag: NWMN_1888 ]
  • symbol: NWMN_RS10865
  • product: phage tail tape measure protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2101579..2106108
  • length: 4530
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2101579..2106108) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1888

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
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    481
    541
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    661
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    901
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    1021
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    1501
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    1981
    2041
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    2521
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    2641
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    4201
    4261
    4321
    4381
    4441
    4501
    ATGGGAGAAAGAATAAAAGGTTTATCTATAGGTTTGGATTTAGATGCAGCAAATTTAAAT
    AGATCATTTGCAGAAATCAAACGAAACTTTAAAACTTTAAATTCTGACTTAAAATTAACC
    GGTAACAACTTCAAATATACCGAAAAATCAACTCATAGTTACAAACAAAGGATTAAAGAA
    CTTGATGGAACTATCACAGGTTATAAGAAAAACGTTGATGATTTAGCCAAGCAATATGGC
    AAGGTATCTCAAGAACAGGGCGAAAACAGCGCGGAAGCTCAAAAATTACGACAAGAATAT
    AACAAACAAGCAAATGAGCTGAATTTTTTAGAAAAAGAACTAGAAAAAACAACAACTGAG
    TTTGAAGAGTTCAAAAAAGCTCAAGTTGAAGCTCAAAGAATGGCAGAAAGTGGCTGGGGA
    AAAACCAGTAAAGTTTTTGAAAGTATGGGACCTAAATTAACAAAAATGGGTGATGGTTTA
    AAATCCATTGGTAAAGGTTTGATGATTGGTGTAACTGCACCTGTTTTAGGTATTGCAGCA
    GCATCAGGAAAAGCTTTTGCAGAAGTTGATAAAGGTTTAGATACAGTTACCCAAGCAACA
    GGAGCAACCGGCGGAGAGCTTAAGAAGTTGCAGAATTCATTTAAAGATGTTTATGGCAAC
    TTTCCAGCAGACGCTGAGACTGTAGGCGGTGTTTTAGGGGAAGTTAACACAAGGTTAGGT
    TTCACTGGCAAAGAACTTGAGAGTGCCACAGAGTCATTCTTGAAATTTAGTCACATAACA
    GGTTCTGACGGCGTACAAGCCGTTCAATTAATTACGCGTGCAATGGGTGATGCAGGTATT
    GAAGCTGATGAGTATCAAAGTGTACTTGATATGGTAGCGAAAGCAGCACAGGCTAGCGGT
    ATAAGTGTTGATACATTAGCTGATAGCATTACTAAATACGGTGCTCCAATGAGGGCTATG
    GGCTTTGAGATGAAAGAATCAATCGCTTTATTCTCTCAATGGGAGAAATCAGGTGTTAAT
    ACTGAAATAGCCTTCAGTGGTTTGAAAAAAGCTATATCCAATTGGGGTAAAGCGGGTAAA
    GACCCAAGAGAAGAATTTAAGAAGACATTAGCAGAAATTGAAAGGACACCGGATATAGCT
    AGCGCAACAAGTTTAGCGATTGAAGCATTTGGTGCAAAAGCAGGTCCTGATTTAGCAGAT
    GCTATTAAAGGCGGTCGCTTTAGTTACCAAGAGTTCTTAAAAACTATCGAAGATTCGCAA
    GGAACGGTCAATCAGACATTTAAAGATTCTGAAAGTGGCTCCGAAAGATTTAAAGTAGCA
    ATGAATAAACTTAAATTAGTAGGTGCTGATGTATGGGCTTCTATTGAAAGTGCGTTTGCT
    CCAGTCATGGAAGAATTAATCAAAAAGCTATCTGTAGCAGTTGATTGGTTTTCAAGTTTA
    AGTGATGGATCTAAAAGGTCGATTGTTATATTCGGTGGTATTGCTGCTGCAATTGGTCCT
    GTAGTTTTTGGATTAGGTGCATTCATAAGCACAATTGGCAACGCAGTAACTGTATTAGCT
    CCATTATTAGCTAGTATTGTAAAGGCTGGCGGATTGATTAGTTTTTTATCAACTAAAGTG
    CCTATTTTAGGAACAGTCTTCACAGCATTAACTGGTCCAATTGGTATCGTGTTAGGTGTA
    CTGGCTGGTTTAGCAGTCGCATTTACAATAGCTTATAAGAAATCTGAAACATTCAGAAAT
    TTTGTTAATGGTGCAATTAACAGTGTTAAACAAACGTTTAGTAATTTCATTCAATTTATC
    CAACCTTTCATTGATTCCGTTAAAAACGTCTTTAAACAAGCGGTTTCAGCAATCGTTGAT
    TTCGCTAAAGATATTTGGAGTCAAATTAATGGATTCTTTAATGAAAACGGAATTTCTATT
    GTTCAAGCGCTTCAAAATATATGCAATTTTATCAAAGCTATATTTGAATTTATCTTAAAT
    TTTGTAATTAAACCAATCATGTTTGCGATTTGGCAAGTGATGCAATTTATTTGGCCGGCG
    GTTAAAGCCTTGATTGTCAGTACTTGGGAGAATATAAAAGGAGTAATACAAGGTGCTTTA
    AATATCATACTTGGCTTTATTAAGTTCTTTTCAAGTTTATTCACTGGTAATTGGCGAGGT
    GTTTGGGACGGTATTGTGATGATACTAAAAGGCACTGTGCAGTTAATTTGGAATTTAATA
    CAACTGTGGTTTGTAGGTAAGATTCTAGGTGTTGTTAGATACTTTGGTGGATTGCTTAAA
    GGTTTAATATCCGGTATCTGGGGTGTTATCAAAGGTATTTTCACAAAATCATTATCTGCA
    ATTTGGAATGCAACGAAAAGTATTTTTGGTTTCTTATACAATAGTGTTAAATCTATTTTC
    ACTAATATGAAAAACTGGTTATCTAGTACGTGGAATAATATCAAAAGCAATACCGTCGGC
    AAGGCTCATTCGTTATTTACGGGTGTAAGGTCTAAATTCACAAGTTTATGGAATGCGACG
    AAAGATATATTTACTAAATTAAGAAATTGGATGTCAAACATCTGGAACTCTATTAAAGAT
    AACACGGTAGGTATAGCGGGTCGCTTATGGGATAGAGTGCGTAACATCTTTGGAAGCATG
    CGTGACGGTTTAAAATCTATCATTAGTAAAATTAAAGATCATATCGGTGGTATGGTAGAC
    GCTGTTAAAAGAGGTCTTAATAAATTAATTGAAGGTTTAAACTGGGTCGGTGGTAAGTTG
    GGTATGGACAAAATACCGAAGTTACACACTGGTACTGAACATACACATACTACTACAAGA
    TTAGTTAAGAACGGTAAGATTGCACGTGACACATTCGCTACAGTTGGGGATAAGGGACGC
    GGAAATGGTCCAAATGGTTTCAGAAATGAAATGATTGAATTCCCTAATGGTAAACGTGTA
    ATCACACCAAATACAGATACTACGGCTTATTTACCTAAAGGCTCAAAAGTATACAACGGG
    GCACAAACTTATTCAATGTTAAACGGAACGCTTCCGAGATTTAGTTTAGGTACTATGTGG
    AAAGATATTAAATCTGGTGCATCATCGGCATTTAACTGGACAAAAGATAAAATAGGTAAA
    GGTACCAAATGGCTTGGCGATAAAGTTGGCGATGTTTTAGATTTTATGGAAAATCCAGGC
    AAACTTTTAAATTATATACTTGAAGCTTTTGGAATTGATTTCAATTCTTTAACTAAAGGT
    ATGGGAATTGCAGGCGACATAACAAAAGCTGCATGGTCTAAGATTAAGAAAAGTGCTACT
    GATTGGATAAAAGAAAATTTAGAAGCTATGGGCGGTGGCGATTTAGTCGGTGGAATATTA
    GACCCTGACAAAATTAATTATCATTATGGACGTACCGCAGCTTATACCGCTGCAACTGGA
    AGACCATTTCATGAAGGTGTCGATTTTCCATTTGTATATCAAGAAGTTAGAACGCCGATG
    GGTGGCAGACTTACAAGAATGCCATTTATGTCTGGTGGTTATGGTAATTATGTAAAAATT
    ACTAGTGGCGTTATCGATATGCTATTTGCGCATTTGAAAAACTTTAGCAAATCACCACCT
    AGTGGCACGATGGTAAAGCCCGGTGATGTTGTTGGTTTAACTGGTAATACCGGATTTAGT
    ACAGGACCACATTTACATTTTGAAATGAGGAGAAATGGAAGACATTTTGACCCTGAACCA
    TATTTAAGGAATGCTAAGAAAAAAGGTAGGTTATCAATTGGTGGCGGTGGCGCTACTTCT
    GGAAGTGGTGCAACTTATGCCAGCCGAGTAATCCGACAAGCACAAAGTATTTTAGGAGGA
    CGTTATAAAGGTAAGTGGATTCATGACCAGATGATGCGAGTTGCAAAGCGCGAAAGTAAC
    TATCAATCAAATGCAGTGAATAATTGGGACATTAATGCTCAAAGAGGAGACCCGTCTAGA
    GGATTATTCCAAATTATCGGCTCAACTTTTAGAGCTAACGCTAAACGAGGGTACACTAAT
    TATAATAATCCAGTACATCAAGGTATCTCAGCAATGCAGTACATTGTTAGACGATATGGT
    TGGGGTGGTTTTAAACGTGCTGGTGATTACGCATATGCTACAGGTGGAAAAGTTTTTGAT
    GGTTGGTATAACTTAGGTGAAGACGGTCATCCAGAATGGATTATTCCAACAGATCCAGCT
    CGTAGAAATGATGCAATGAAGATTTTGCATTATGCAGCAGCAGAAGTAAGAGGGAAAAAA
    GCGAGTAAAAATAAGCGTCCTAGCCAATTATCAGACTTAAACGGGTTTGATGATCCTAGC
    TTATTATTGAAAATGATTGAACAACAGCAACAACAAATAGCTTTATTACTGAAAATAGCA
    CAATCTAACGATGTGATTGCAGATAAAGATTATCAGCCGATTATTGACGAATACGCTTTT
    GATAAAAAGGTGAACGCGTCTATAGAAAAGCGAGAAAGGCAAGAATCAACAAAAGTAAAG
    TTTAGAAAAGGAGGAATTGCTATTCAATGA
    60
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    4530

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS10865 [old locus tag: NWMN_1888 ]
  • symbol: NWMN_RS10865
  • description: phage tail tape measure protein
  • length: 1509
  • theoretical pI: 10.2657
  • theoretical MW: 165439
  • GRAVY: -0.203048

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage tail tape measure protein, TP901 family, core region (TIGR01760; HMM-score: 65.3)
    and 11 more
    two transmembrane protein (TIGR04527; HMM-score: 26.1)
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 24.3)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 24.3)
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 23.8)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 23.8)
    Unknown function Enzymes of unknown specificity quinoprotein relay system zinc metallohydrolase 2 (TIGR04559; EC 3.-.-.-; HMM-score: 13.6)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaD domain protein (TIGR01446; HMM-score: 13)
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions DnaD domain protein (TIGR01446; HMM-score: 13)
    Genetic information processing Protein synthesis tRNA aminoacylation serine--tRNA ligase (TIGR00414; EC 6.1.1.11; HMM-score: 11.7)
    phasin (TIGR01985; HMM-score: 8.8)
    SH3 domain protein (TIGR04211; HMM-score: 8.1)
  • TheSEED: see NWMN_1888
  • PFAM:
    no clan defined PhageMin_Tail; Phage-related minor tail protein (PF10145; HMM-score: 74.1)
    Hybrid (CL0105) Peptidase_M23; Peptidase family M23 (PF01551; HMM-score: 64.1)
    and 36 more
    no clan defined TMP_3; Tape measure protein (PF20155; HMM-score: 23.7)
    Lysozyme (CL0037) SLT; Transglycosylase SLT domain (PF01464; HMM-score: 22.5)
    no clan defined OVT1; Major antigen, helical domain (PF24423; HMM-score: 21.9)
    DUF948; Bacterial protein of unknown function (DUF948) (PF06103; HMM-score: 19)
    APG6_N; Apg6 coiled-coil region (PF17675; HMM-score: 17.5)
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein (PF07926; HMM-score: 15.8)
    DUF7801; Domain of unknown function (DUF7801) (PF25078; HMM-score: 15.7)
    TMP_2; Prophage tail length tape measure protein (PF06791; HMM-score: 15.2)
    YtxH; YtxH-like protein (PF12732; HMM-score: 14.5)
    Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 14.4)
    EsxAB (CL0352) WXG100; Proteins of 100 residues with WXG (PF06013; HMM-score: 13.9)
    Lysozyme (CL0037) SLT_3; Lysozyme like domain (PF18896; HMM-score: 13.8)
    no clan defined Laminin_I; Laminin Domain I (PF06008; HMM-score: 13.5)
    YebO; YebO-like protein (PF13974; HMM-score: 13.5)
    Crescentin; Crescentin protein (PF19220; HMM-score: 13.4)
    Pec_lyase-like (CL0268) FapA; Flagellar Assembly Protein A beta solenoid domain (PF03961; HMM-score: 12.6)
    no clan defined DUF745; Protein of unknown function (DUF745) (PF05335; HMM-score: 12.3)
    TACC (CL0679) TACC_C; Transforming acidic coiled-coil-containing protein (TACC), C-terminal (PF05010; HMM-score: 11.9)
    TPR (CL0020) COG3_N; Conserved oligomeric Golgi complex subunit 3, N-terminal (PF04136; HMM-score: 11.6)
    no clan defined BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2 (PF10046; HMM-score: 11)
    Phage_GPO; Phage capsid scaffolding protein (GPO) serine peptidase (PF05929; HMM-score: 10.6)
    Collagen_mid; Bacterial collagen, middle region (PF15984; HMM-score: 10.5)
    NACHT_N (CL0864) Goodbye; fungal STAND N-terminal Goodbye domain (PF17109; HMM-score: 10.5)
    no clan defined EzrA; Septation ring formation regulator, EzrA (PF06160; HMM-score: 10.4)
    tRNA_bind_arm (CL0298) Seryl_tRNA_N; Seryl-tRNA synthetase N-terminal domain (PF02403; HMM-score: 10.3)
    no clan defined FlaC_arch; Flagella accessory protein C (FlaC) (PF05377; HMM-score: 9.9)
    Fez1; Fez1 (PF06818; HMM-score: 9.9)
    DUF16; Protein of unknown function DUF16 (PF01519; HMM-score: 9.3)
    Kinetochore (CL0724) Spc24; Spc24 subunit of Ndc80 (PF08286; HMM-score: 9.1)
    no clan defined HAUS6_N; HAUS augmin-like complex subunit 6 N-terminus (PF14661; HMM-score: 8.3)
    Occludin_ELL; Occludin homology domain (PF07303; HMM-score: 7.5)
    Fib_alpha; Fibrinogen alpha/beta chain family (PF08702; HMM-score: 7.2)
    DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 7.1)
    Adhesin_P1_N; Adhesin P1 N-terminal domain (PF18652; HMM-score: 7.1)
    Tho2; Transcription factor/nuclear export subunit protein 2 (PF11262; HMM-score: 6)
    IFT57; Intra-flagellar transport protein 57 (PF10498; HMM-score: 5.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 9.35
    • Cellwall Score: 0.32
    • Extracellular Score: 0.32
    • Internal Helices: 6
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0002
    • Cytoplasmic Membrane Score: 0.4782
    • Cell wall & surface Score: 0.0151
    • Extracellular Score: 0.5065
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.020835
    • TAT(Tat/SPI): 0.002675
    • LIPO(Sec/SPII): 0.001517
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGERIKGLSIGLDLDAANLNRSFAEIKRNFKTLNSDLKLTGNNFKYTEKSTHSYKQRIKELDGTITGYKKNVDDLAKQYGKVSQEQGENSAEAQKLRQEYNKQANELNFLEKELEKTTTEFEEFKKAQVEAQRMAESGWGKTSKVFESMGPKLTKMGDGLKSIGKGLMIGVTAPVLGIAAASGKAFAEVDKGLDTVTQATGATGGELKKLQNSFKDVYGNFPADAETVGGVLGEVNTRLGFTGKELESATESFLKFSHITGSDGVQAVQLITRAMGDAGIEADEYQSVLDMVAKAAQASGISVDTLADSITKYGAPMRAMGFEMKESIALFSQWEKSGVNTEIAFSGLKKAISNWGKAGKDPREEFKKTLAEIERTPDIASATSLAIEAFGAKAGPDLADAIKGGRFSYQEFLKTIEDSQGTVNQTFKDSESGSERFKVAMNKLKLVGADVWASIESAFAPVMEELIKKLSVAVDWFSSLSDGSKRSIVIFGGIAAAIGPVVFGLGAFISTIGNAVTVLAPLLASIVKAGGLISFLSTKVPILGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAINSVKQTFSNFIQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQALQNICNFIKAIFEFILNFVIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGVIQGALNIILGFIKFFSSLFTGNWRGVWDGIVMILKGTVQLIWNLIQLWFVGKILGVVRYFGGLLKGLISGIWGVIKGIFTKSLSAIWNATKSIFGFLYNSVKSIFTNMKNWLSSTWNNIKSNTVGKAHSLFTGVRSKFTSLWNATKDIFTKLRNWMSNIWNSIKDNTVGIAGRLWDRVRNIFGSMRDGLKSIISKIKDHIGGMVDAVKRGLNKLIEGLNWVGGKLGMDKIPKLHTGTEHTHTTTRLVKNGKIARDTFATVGDKGRGNGPNGFRNEMIEFPNGKRVITPNTDTTAYLPKGSKVYNGAQTYSMLNGTLPRFSLGTMWKDIKSGASSAFNWTKDKIGKGTKWLGDKVGDVLDFMENPGKLLNYILEAFGIDFNSLTKGMGIAGDITKAAWSKIKKSATDWIKENLEAMGGGDLVGGILDPDKINYHYGRTAAYTAATGRPFHEGVDFPFVYQEVRTPMGGRLTRMPFMSGGYGNYVKITSGVIDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDPEPYLRNAKKKGRLSIGGGGATSGSGATYASRVIRQAQSILGGRYKGKWIHDQMMRVAKRESNYQSNAVNNWDINAQRGDPSRGLFQIIGSTFRANAKRGYTNYNNPVHQGISAMQYIVRRYGWGGFKRAGDYAYATGGKVFDGWYNLGEDGHPEWIIPTDPARRNDAMKILHYAAAEVRGKKASKNKRPSQLSDLNGFDDPSLLLKMIEQQQQQIALLLKIAQSNDVIADKDYQPIIDEYAFDKKVNASIEKRERQESTKVKFRKGGIAIQ

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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