PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus Newman
• locus tag: NWMN_RS10220 [old locus tag: NWMN_1789 ]
• pan locus tag^?: SAUPAN001740000
• symbol: NWMN_RS10220
• pan gene symbol^?: —
• synonym:
• product: major capsid protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_RS10220 [old locus tag: NWMN_1789 ]
• symbol: NWMN_RS10220
• product: major capsid protein
• replicon: chromosome
• strand: -
• coordinates: 2000407..2001381
• length: 975
• essential: unknown

⊟Accession numbers

• Location: NC_009641 (2000407..2001381) NCBI
• BioCyc:
• MicrobesOnline: see NWMN_1789

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  661
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  901
  961
  
  ATGGAACAAACACAAAAATTAAAATTAAATTTGCAACATTTTGCAAGTAACAATGTTAAA
  CCACAAGTATTTAACCCTGACAATGTAATGATGCACGAAAAGAAAGATGGCACGTTGTTA
  AACGACTTTACAACACCTATCTTACAAGAGGTTATGGAAAACTCTAAAATTATGCAATTA
  GGTAAGTACGAACCAATGGAAGGTACTGAGAAGAAGTTTACTTTTTGGGCTGATAAACCA
  GGTGCTTACTGGGTAGGTGAAGGTCAAAAAATCGAAACATCTAAAGCTACATGGGTTAAT
  GCTACTATGAGAGCGTTTAAATTAGGGGTTATCTTACCTGTAACAAAAGAATTTTTGAAT
  TACACTTATTCACAATTCTTTGAAGAAATGAAGCCTATGATTGCTGAAGCATTCTATAAA
  AAGTTTGATGAAGCGGGTATTTTGAATCAAGGTAACAATCCATTCGGTAAATCAATTGCA
  CAATCAATTGAAAAAACTAATAAGGTTATTAAAGGTGACTTCACACAAGATAACATTATT
  GATTTAGAGGCATTACTTGAAGATGACGAATTAGAAGCAAATGCGTTTATCTCAAAAACA
  CAAAACAGAAGCTTGTTACGTAAAATTGTAGATCCTGAAACTAAGGAACGTATTTATGAC
  CGTAACAGTGATACGTTAGATGGTCTACCTGTGGTTAACCTTAAATCAAGCAATTTAAAA
  CGCGGTGAATTAATTACTGGTGACTTTGATAAGTTGATTTACGGTATCCCTCAATTAATT
  GAATACAAAATCGATGAAACTGCACAATTATCTACAGTTAAAAACGAAGATGGCACACCT
  GTAAACTTATTCGAACAAGACATGGTGGCATTGCGTGCAACTATGCATGTAGCGTTACAC
  ATCGCTGACGATAAAGCATTCGCTAAATTAGTGCCTGCTGACAAAAAAACAGATTCAGTA
  CCAGGAGAAGTTTAA
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⊟Protein

⊟General

• locus tag: NWMN_RS10220 [old locus tag: NWMN_1789 ]
• symbol: NWMN_RS10220
• description: major capsid protein
• length: 324
• theoretical pI: 4.87832
• theoretical MW: 36756.7
• GRAVY: -0.480864

⊟Function

• TIGRFAM:
  Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage major capsid protein, HK97 family (TIGR01554; HMM-score: 67.2)
• TheSEED:
• PFAM:
  Phage-coat (CL0373) Phage_capsid; Phage capsid family (PF05065; HMM-score: 154.1)
  and 2 more
  no clan defined HHA; Haemolysin expression modulating protein (PF05321; HMM-score: 13.6)
  Tudor (CL0049) LBR_tudor; Lamin-B receptor of TUDOR domain (PF09465; HMM-score: 13.5)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.002584
  • TAT(Tat/SPI): 0.000112
  • LIPO(Sec/SPII): 0.000311
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446360649 NCBI
• RefSeq: WP_000438504 NCBI
• UniProt: see NWMN_1789

⊟Protein sequence

• MEQTQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLLNDFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTFWADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTYSQFFEEMKPMIAEAFYKKFDEAGILNQGNNPFGKSIAQSIEKTNKVIKGDFTQDNIIDLEALLEDDELEANAFISKTQNRSLLRKIVDPETKERIYDRNSDTLDGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKNEDGTPVNLFEQDMVALRATMHVALHIADDKAFAKLVPADKKTDSVPGEV

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications