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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS07400 [old locus tag: NWMN_1314 ]
  • pan locus tag?: SAUPAN003819000
  • symbol: NWMN_RS07400
  • pan gene symbol?: msaA
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS07400 [old locus tag: NWMN_1314 ]
  • symbol: NWMN_RS07400
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1446243..1446551
  • length: 309
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1446243..1446551) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1314

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGTGGACAGTTACCAAAATTAGAGCCGATTATGAGGGATGGTGGTTATTCAGTGACTGG
    CCAGAAAACATTGTTGAAAAATATCAATATCAAGATTTTGATGACATGTTTAAGCACTAT
    CAACAATTGATTAATCAATGTAAAGTTCAGTTCGATAACTATGTCACAGGCAAATATAAT
    ATTTATGCATTTTATAATAATTGTGACATGAACTATTGCGAAGATTGTGAAGAGGATTTA
    CAAATATTTTATAGTTTCATTGTTTTACAAAATAATGAAGTATATTATAAACTACCAATA
    ATTGATTAA
    60
    120
    180
    240
    300
    309

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS07400 [old locus tag: NWMN_1314 ]
  • symbol: NWMN_RS07400
  • description: hypothetical protein
  • length: 102
  • theoretical pI: 3.96148
  • theoretical MW: 12720.2
  • GRAVY: -0.567647

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see NWMN_1314
  • PFAM:
    no clan defined DUF1033; Protein of unknown function (DUF1033) (PF06279; HMM-score: 64.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.3652
    • Cytoplasmic Membrane Score: 0.0022
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.6326
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.02318
    • TAT(Tat/SPI): 0.000154
    • LIPO(Sec/SPII): 0.003974
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MWTVTKIRADYEGWWLFSDWPENIVEKYQYQDFDDMFKHYQQLINQCKVQFDNYVTGKYNIYAFYNNCDMNYCEDCEEDLQIFYSFIVLQNNEVYYKLPIID

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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