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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS05770 [old locus tag: NWMN_1018 ]
- pan locus tag?: SAUPAN001685000
- symbol: NWMN_RS05770
- pan gene symbol?: —
- synonym:
- product: phage capsid protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS05770 [old locus tag: NWMN_1018 ]
- symbol: NWMN_RS05770
- product: phage capsid protein
- replicon: chromosome
- strand: +
- coordinates: 1120119..1120733
- length: 615
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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601ATGGATATCCAAGAGAAGTTAAAACTCAAATTACAGTTTTTTGCTGAAGAATCAGATGGA
GATAATGGAAAATCAAAAGATAACAACGATGATGAAGGCAAAGACAAACAAGACAAAAAG
ACTAATTCAGAAGAAGAAATCGAAAAAAGACTACAAGAAGAATATAACAAGCGTCTTAAA
GAAGAATTAAGTCGTCGTATGAAGCAGAAAGAAAAAGAGAAACAAGAAGCTGTTGATGAA
GCTAAACGATTAGCAAAAATGAACAAAGATCAAATCGCTGAATATGAACGCGAACAAATG
GAAAAAGAGCTGGAACAATTACGTTCAGAAAAACAATTAAACGAAATGCGTTCAGAAGCA
CGAAAAATGTTGAGTGAAGCGGAAGTTGATTCATCAGATGAGGTTGTCAATTTGGTTGTA
ACTGACACTGCTGAACAAACCAAATCGAACGTTGAAGCTTTTTCTAATGCAGTAAAAAAA
GCGGTTAATGAAGCGGTTAAGGTTAACGCTAGACAATCGCCATTGACTGGTGGAGATTCA
TTTAATCACTCGACTAAAAATAAACCGCAAAACTTAGCTGAAATAGCTAGACAAAAAAGA
ATTATTAAAAATTAA60
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615
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS05770 [old locus tag: NWMN_1018 ]
- symbol: NWMN_RS05770
- description: phage capsid protein
- length: 204
- theoretical pI: 5.19987
- theoretical MW: 23664.2
- GRAVY: -1.40882
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Cations and iron carrying compounds ferrous iron transport protein B (TIGR00437; HMM-score: 2.9)
- TheSEED: data available for NCTC8325
- PFAM: no clan defined DUF4355; Domain of unknown function (DUF4355) (PF14265; HMM-score: 94.8)and 2 morePeptidase_MA (CL0126) DUF45; Protein of unknown function DUF45 (PF01863; HMM-score: 8.5)no clan defined Tfb2; Transcription factor Tfb2 (PF03849; HMM-score: 7.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008156
- TAT(Tat/SPI): 0.001648
- LIPO(Sec/SPII): 0.004845
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MDIQEKLKLKLQFFAEESDGDNGKSKDNNDDEGKDKQDKKTNSEEEIEKRLQEEYNKRLKEELSRRMKQKEKEKQEAVDEAKRLAKMNKDQIAEYEREQMEKELEQLRSEKQLNEMRSEARKMLSEAEVDSSDEVVNLVVTDTAEQTKSNVEAFSNAVKKAVNEAVKVNARQSPLTGGDSFNHSTKNKPQNLAEIARQKRIIKN
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.