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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS02510 [old locus tag: NWMN_0444 ]
  • pan locus tag?: SAUPAN002200000
  • symbol: NWMN_RS02510
  • pan gene symbol?: recR
  • synonym:
  • product: recombination protein RecR

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS02510 [old locus tag: NWMN_0444 ]
  • symbol: NWMN_RS02510
  • product: recombination protein RecR
  • replicon: chromosome
  • strand: +
  • coordinates: 501036..501632
  • length: 597
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (501036..501632) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0444

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATT
    GGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTT
    GTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGT
    GGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
    GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATAC
    AAAGGTTTATATCACGTTTTACATGGGTCTATTTCGCCTATGGATGGCATTGGACCAGAA
    GATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACGATGAAGTTAGCGAATTAATC
    TTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
    AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTA
    GAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    597

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS02510 [old locus tag: NWMN_0444 ]
  • symbol: NWMN_RS02510
  • description: recombination protein RecR
  • length: 198
  • theoretical pI: 4.75667
  • theoretical MW: 22099.4
  • GRAVY: -0.191414

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair recombination protein RecR (TIGR00615; HMM-score: 290.7)
    and 1 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair Holliday junction DNA helicase RuvA (TIGR00084; EC 3.6.4.12; HMM-score: 11.4)
  • TheSEED: see NWMN_0444
  • PFAM:
    Toprim-like (CL0413) Toprim_4; Toprim domain (PF13662; HMM-score: 92.7)
    and 11 more
    HHH (CL0198) RecR_HhH; RecR, helix-hairpin-helix (PF21176; HMM-score: 64.5)
    Toprim-like (CL0413) Toprim; Toprim domain (PF01751; HMM-score: 46.4)
    no clan defined RecR_C; RecR, C-terminal (PF21175; HMM-score: 43.1)
    Tbcl_zf (CL0839) RecR_ZnF; RecR, Cys4-zinc finger domain (PF02132; HMM-score: 35.1)
    HHH (CL0198) HHH; Helix-hairpin-helix motif (PF00633; HMM-score: 22.7)
    HHH_5; Helix-hairpin-helix domain (PF14520; HMM-score: 19.1)
    HHH_8; Helix-hairpin-helix domain (PF14716; HMM-score: 16.3)
    IMS_HHH; IMS family HHH motif (PF11798; HMM-score: 14.2)
    RING (CL0229) zf-RING_16; RING/Ubox like zinc-binding domain (PF17120; HMM-score: 12.9)
    no clan defined DUF6433; Family of unknown function (DUF6433) (PF20025; HMM-score: 12.7)
    RUBY_RBDX; Rubrerythrin, rubredoxin-like domain (PF21349; HMM-score: 8.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9824
    • Cytoplasmic Membrane Score: 0.0022
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0154
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009138
    • TAT(Tat/SPI): 0.000835
    • LIPO(Sec/SPII): 0.001017
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRSVICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLVKPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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