Jump to navigation
Jump to search
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS02280 [old locus tag: NWMN_0403 ]
- pan locus tag?: SAUPAN002134000
- symbol: NWMN_RS02280
- pan gene symbol?: lpl1
- synonym:
- product: tandem-type lipoprotein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS02280 [old locus tag: NWMN_0403 ]
- symbol: NWMN_RS02280
- product: tandem-type lipoprotein
- replicon: chromosome
- strand: +
- coordinates: 453221..453994
- length: 774
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721ATGGGATATTTAAAAAGGTTTGCATTGTACATAAGCGTTATGATTTTAATATTTGCGATA
GCAGGTTGTGGCAAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAG
AGCTTTGCGAAAACATTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGACAAA
GAAGGATATCGAGATAGCGAATTTAAAAAAGGTGACAAAGGGATGTGGACGATATATACA
GATTTCGCCAAAAGTAATAAACCGGGTGAATTGGATGATGAAGGTATGGTTTTAAATCTG
GATAGGAATACTAGAACCGCTAAAGGCCATTATTTTGTTACTACATTTTACCGGAATGGT
AAACTACCAGATGAAAAGAATTATAAAATTGAAATGAAAAATAATAAGATTATTTTATTA
GATGAAGTAAAAGATGATAAGCTCAAGCAGAAAATAGAAAACTTTAAATTTTTCGGTCAA
TATGCAAATCTTAAAGAATTGAGAAAATATAATAATGGTGATGTTTCAATTAATGAAAAT
GTTCCTAGTTATGATGTTGAATACAAAATGAGCAATAAAGATGAAATAGTTAAGGAATTA
AGAAGTCGTTATAATATTTCGACTGAAAAATCACCTATATTAAAAATGCATATTGATGGG
GACCTGAAAGGCAGTTCTGTAGGTTATAGAAAGTTAGAAATTGACTTTTCAAAACGTGAA
AACAGCAAATTATCAGTCATTGAATTTTTAAGTTATAAACCAGCGAAAAAATAG60
120
180
240
300
360
420
480
540
600
660
720
774
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS02280 [old locus tag: NWMN_0403 ]
- symbol: NWMN_RS02280
- description: tandem-type lipoprotein
- length: 257
- theoretical pI: 9.51151
- theoretical MW: 30008.1
- GRAVY: -0.829183
⊟Function[edit | edit source]
- TIGRFAM: Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 380.9)
- TheSEED: data available for N315, USA300_FPR3757
- PFAM: LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 358.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- LocateP:
- SignalP: Signal peptide LIPO(Sec/SPII) length 22 aa
- SP(Sec/SPI): 0.000482
- TAT(Tat/SPI): 0.000056
- LIPO(Sec/SPII): 0.999267
- Cleavage Site: CS pos: 22-23. IAG-CG. Pr: 0.9997
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGYLKRFALYISVMILIFAIAGCGKGNETKEDSKEEQIKKSFAKTLDMYPIKNLEDLYDKEGYRDSEFKKGDKGMWTIYTDFAKSNKPGELDDEGMVLNLDRNTRTAKGHYFVTTFYRNGKLPDEKNYKIEMKNNKIILLDEVKDDKLKQKIENFKFFGQYANLKELRKYNNGDVSINENVPSYDVEYKMSNKDEIVKELRSRYNISTEKSPILKMHIDGDLKGSSVGYRKLEIDFSKRENSKLSVIEFLSYKPAKK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: SaeR see NWMN_0403
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.