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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2164 [new locus tag: NWMN_RS12500 ]
  • pan locus tag?: SAUPAN005721000
  • symbol: NWMN_2164
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_2164 [new locus tag: NWMN_RS12500 ]
  • symbol: NWMN_2164
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2390059..2390823
  • length: 765
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGATATTGAAATTTGATCACATCATTCATTATATAGATCAGTTAGATCGGTTTAGTTTT
    CCAGGAGATGTTATAAAATTACATTCAGGTGGGTATCATCATAAATATGGAACATTCAAT
    AAATTAGGTTATATCAATGAAAATTATATTGAGCTACTAGATGTAGAAAATAATGAAAAG
    TTGAAAAAGATGGCAAAAACGATAGAAGGCGGAGTCGCTTTTGCTACTCAAATTGTTCAA
    GAGAAGTATGAGCAAGGCTTTAAAAATATTTGTTTGCATACAAATGATATAGAGGCAGTT
    AAAAATAAACTACAAAGTGAGCAGGTTGAAGTAGTAGGGCCGATTCAAATGGAAAGAGAT
    ACACATAAAGATGGTAAGGTAAAGTGGCAATTGCTTTATATAATGAATCAGGATGATGAT
    GAAATTAAGCCACCATTTTTTATTCAATGGGAAGAAAGTGATTCCATGCGTACTAAAAAA
    TTGCAAAAATATTTTCAAAAACAATTTTCAATTGAAACTGTTATTGTGAAAAGTAAAAAC
    CGATCACAAACAGTATCGAATTGGTTGAAATGGTTTGATATGGACATTGTAGAAGAGAAT
    GACCATTACACAGATTTGATTTTAAAAAATGATGATATTTATTTTAGAATTGAAGATGGT
    AAAGTTTCAAAATATCATTCGGTTATCATAAAAGACGCACAAGCAACTTCACCATATTCA
    ATTTTTATCAGAGGTGCTATTTATCGCTTTGAACCATTAGTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    765

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_2164 [new locus tag: NWMN_RS12500 ]
  • symbol: NWMN_2164
  • description: hypothetical protein
  • length: 254
  • theoretical pI: 6.42844
  • theoretical MW: 30030
  • GRAVY: -0.557874

⊟Function[edit | edit source]

  • TIGRFAM:
    methylmalonyl-CoA epimerase (TIGR03081; EC 5.1.99.1; HMM-score: 16)
  • TheSEED  :
    • Hypothetical protein SAV2264
  • PFAM:
    Glyoxalase (CL0104) Glyoxalase_3; Glyoxalase-like domain (PF13468; HMM-score: 126.3)
    and 2 more
    no clan defined DUF3126; Protein of unknown function (DUF3126) (PF11324; HMM-score: 11.8)
    HTH (CL0123) DUF7226; Domain of unknown function (DUF7226) (PF23871; HMM-score: 11.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9499
    • Cytoplasmic Membrane Score: 0.0474
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0026
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01115
    • TAT(Tat/SPI): 0.000161
    • LIPO(Sec/SPII): 0.000316
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLHTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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