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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1642 [new locus tag: NWMN_RS09220 ]
  • pan locus tag?: SAUPAN004426000
  • symbol: NWMN_1642
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1642 [new locus tag: NWMN_RS09220 ]
  • symbol: NWMN_1642
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1829332..1830123
  • length: 792
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    TTGGAGCAGTTTTATCAATTAGGGTGGACACTTGATTCAGCAGGTGGTGCATCTGGTGAA
    GCATATATGGCTGAACAAGATGGACAAAAGTTGTTTTTAAAACGAAATTCAAATCCATTT
    ATTGCGGCATTATCAGCAGAAGGTATTGTGCCCAAATTAGTATGGACGAAACGCATAGAA
    ACAGGCGAGGTTGTTACAGCACAACATTGGAAAAATGGGCGTGAACTATCTTCAAACGAA
    ATGAAGCAAACAAGAGTTGCACATTTATTAAAGAAGATACACAATTCTAGACCTTTATTA
    AGTATGTTAAAGCGTATGGAAATGGAACCTATTACTCCTGAGATTATGCTTAATAAAATT
    AATGCCTCTTTATCAAGAGAAGTTTTAACACATCATATTGTGAGAAAATCATTAACCTAT
    TTAGAAGAGCATATACCGAGTTTAGATTCGCGTTTTTTCACTGTTGTACATGGTGATGTG
    AATCATAATAATTGGTTATTATCCGATCGAGATGAACTATTTTTAGTTGATTGGGAAGGT
    GCAATGATTGCAGACCCGGCAATTGATATCGGAATGCTGCTTTACAACTATGTTCCACAA
    CAACAATGGTCTGAATGGCTTGAAACATATGGTGTTCAAGAGAGCTTGAATTTAAATAAA
    CGTATGAAATGGTATACGGTAATTCAATCTATAGGTCTTGTTCAATGGTATGAAGAGCAA
    AAAAGATATAAGGATATGAACACTTGGCTTAAATTCCTAAATGAAGTTATGAATAGTAAC
    ATGTTTATTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    792

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1642 [new locus tag: NWMN_RS09220 ]
  • symbol: NWMN_1642
  • description: hypothetical protein
  • length: 263
  • theoretical pI: 6.52097
  • theoretical MW: 30752.1
  • GRAVY: -0.385171

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine thiamine kinase (TIGR02721; EC 2.7.1.89; HMM-score: 30)
    Cellular processes Cellular processes Sporulation and germination spore coat protein YsxE (TIGR02904; HMM-score: 24.1)
    and 1 more
    Unknown function General Kae1-associated kinase Bud32 (TIGR03724; EC 2.7.-.-; HMM-score: 12)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    PKinase (CL0016) APH; Phosphotransferase enzyme family (PF01636; HMM-score: 71.8)
    and 3 more
    Choline_kinase; Choline/ethanolamine kinase (PF01633; HMM-score: 34.2)
    EcKinase; Ecdysteroid kinase (PF02958; HMM-score: 27.2)
    Fructosamin_kin; Fructosamine kinase (PF03881; HMM-score: 17.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.013257
    • TAT(Tat/SPI): 0.001935
    • LIPO(Sec/SPII): 0.002866
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEQFYQLGWTLDSAGGASGEAYMAEQDGQKLFLKRNSNPFIAALSAEGIVPKLVWTKRIETGEVVTAQHWKNGRELSSNEMKQTRVAHLLKKIHNSRPLLSMLKRMEMEPITPEIMLNKINASLSREVLTHHIVRKSLTYLEEHIPSLDSRFFTVVHGDVNHNNWLLSDRDELFLVDWEGAMIADPAIDIGMLLYNYVPQQQWSEWLETYGVQESLNLNKRMKWYTVIQSIGLVQWYEEQKRYKDMNTWLKFLNEVMNSNMFI

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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