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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0474 [new locus tag: NWMN_RS02710 ]
  • pan locus tag?: SAUPAN002254000
  • symbol: hslO
  • pan gene symbol?: hslO
  • synonym:
  • product: Hsp33-like chaperonin

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0474 [new locus tag: NWMN_RS02710 ]
  • symbol: hslO
  • product: Hsp33-like chaperonin
  • replicon: chromosome
  • strand: +
  • coordinates: 539659..540540
  • length: 882
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGACACACGATTATATTGTTAAAGCATTAGCATTTGATGGAGAGATTAGGGCTTATGCT
    GCTTTGACAACTGAAACTGTTCAAGAAGCACAAACGAGACATTATACATGGCCGACAGCA
    TCTGCTGCAATGGGAAGAACAATGACAGCAACAGCTATGATGGGCGCAATGTTGAAAGGT
    GATCAAAAATTAACTGTCACTGTAGATGGCCAAGGACCTATTGGACGAATTATTGCCGAT
    GCAAATGCTAAAGGCGAGGTGCGTGCTTATGTAGACCATCCACAAACTCATTTTCCATTA
    AATGAGCAAGGTAAACTTGATGTAAGACGAGCGGTAGGGACAAATGGATCTATTATGGTT
    GTTAAAGACGTTGGAATGAAAGACTATTTCTCTGGAGCAAGTCCAATTGTTTCAGGAGAA
    CTTGGTGAAGATTTTACTTATTATTATGCTACAAGTGAACAAACACCTTCATCGGTAGGT
    CTTGGTGTATTGGTAAATCCTGATAATACGATTAAAGCAGCAGGAGGATTTATCATTCAA
    GTTATGCCAGGTGCCAAAGATGAAACAATTTCAAAATTAGAAAAAGCAATTAGTGAAATG
    ACACCAGTTTCTAAATTAATTGAACAAGGATTAACGCCAGAAGGATTACTAAACGAAATC
    TTAGGTGAAGACCATGTGCAAATTTTAGAGAAAATGCCTGTTCAATTTGAATGTAATTGT
    AGTCATGAGAAATTTTTAAATGCTATTAAAGGATTGGGCGAGGCTGAGATTCAAAATATG
    ATTAAAGAAGATCATGGTGCTGAAGCAGTATGTCATTTCTGTGGAAATAAATATAAATAT
    ACTGAAGAAGAATTAAACGTGTTGCTAGAAAGTTTAGCGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    882

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0474 [new locus tag: NWMN_RS02710 ]
  • symbol: HslO
  • description: Hsp33-like chaperonin
  • length: 293
  • theoretical pI: 4.70599
  • theoretical MW: 31822
  • GRAVY: -0.196246

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • 33 kDa chaperonin HslO
    Virulence, Disease and Defense Adhesion Streptococcus pyogenes recombinatorial zone  Chaperonin (heat shock protein 33)
  • PFAM:
    no clan defined HSP33; Hsp33 protein (PF01430; HMM-score: 342.4)
    and 1 more
    DUF2321; Uncharacterized protein conserved in bacteria (DUF2321) (PF10083; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9965
    • Cytoplasmic Membrane Score: 0.0005
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0029
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.024611
    • TAT(Tat/SPI): 0.005617
    • LIPO(Sec/SPII): 0.002075
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTHDYIVKALAFDGEIRAYAALTTETVQEAQTRHYTWPTASAAMGRTMTATAMMGAMLKGDQKLTVTVDGQGPIGRIIADANAKGEVRAYVDHPQTHFPLNEQGKLDVRRAVGTNGSIMVVKDVGMKDYFSGASPIVSGELGEDFTYYYATSEQTPSSVGLGVLVNPDNTIKAAGGFIIQVMPGAKDETISKLEKAISEMTPVSKLIEQGLTPEGLLNEILGEDHVQILEKMPVQFECNCSHEKFLNAIKGLGEAEIQNMIKEDHGAEAVCHFCGNKYKYTEEELNVLLESLA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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