From AureoWiki
Jump to navigation Jump to search

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002587
  • pan locus tag?: SAUPAN006305000
  • symbol: JSNZ_002587
  • pan gene symbol?: fdaB
  • synonym:
  • product: fructose bisphosphate aldolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002587
  • symbol: JSNZ_002587
  • product: fructose bisphosphate aldolase
  • replicon: chromosome
  • strand: +
  • coordinates: 2592600..2593490
  • length: 891
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAATAAAGAGCAATTAGAAAAAATGAAAAATGGAAAAGGCTTTATTGCCGCATTAGAC
    CAAAGTGGTGGTAGTACACCAAAAGCACTTAAAGAATATGGTGTAAACGAAGATCAATAT
    AGCAATGAAGACGAAATGTTCCAACTTGTTCACGATATGCGTACACGTGTGGTAACTTCA
    CCTTCATTCTCACCAGATAAAATTTTGGGTGCTATTCTTTTCGAACAAACAATGGATCGC
    GAAGTAGAAGGCAAATACACTGCAGATTACTTAGCTGATAAAGGTGTTGTTCCGTTCTTA
    AAAGTAGACAAAGGTCTTGCTGAAGAGCAAAATGGTGTTCAATTAATGAAACCAATCGAC
    AACTTAGACAGTTTATTAGACCGTGCAAACGAACGTCACATTTTTGGTACAAAAATGCGT
    TCTAACATTTTAGAATTAAATGAGCAAGGTATCAAAGACGTTGTTGAACAACAATTTGAA
    GTTGCTAAACAAATTATTGCTAAAGGTTTAGTTCCAATTATCGAACCAGAAGTTAATATT
    AATGCAAAAGACAAAGCTGAAATTGAAAAAGTATTAAAAGCTGAACTTAAAAAAGGTTTA
    GATAGCTTAAATGCTGATCAATTAGTAATGTTGAAATTAACAATTCCTACTGAACCAAAC
    TTATACAAAGAGTTAGCTGAACATCCTAATGTTGTTCGTGTCGTTGTATTATCAGGTGGT
    TACAGCAGAGAAAAAGCAAATGAATTACTTAAAGATAACGCTGAACTTATCGCAAGTTTC
    TCACGTGCATTAGCTAGTGATTTAAGAGCTGATCAATCTAAAGAAGAATTCGATAAAGCT
    TTAGGTGATGCTGTAGAATCAATCTACGACGCATCTGTAAACAAAAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    891

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002587
  • symbol: JSNZ_002587
  • description: fructose bisphosphate aldolase
  • length: 296
  • theoretical pI: 4.64772
  • theoretical MW: 32997.3
  • GRAVY: -0.45777

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other tyrosine decarboxylase MnfA (TIGR03812; EC 4.1.1.25; HMM-score: 11.7)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    TIM_barrel (CL0036) Glycolytic; Fructose-bisphosphate aldolase class-I (PF00274; HMM-score: 48.3)
    and 3 more
    no clan defined GD_AH_second; D-galactarate dehydratase/Altronate hydrolase, second domain (PF04295; HMM-score: 16.7)
    Clp_N; Clp amino terminal domain, pathogenicity island component (PF02861; HMM-score: 14.8)
    Arginase (CL0302) Hist_deacetyl; Histone deacetylase domain (PF00850; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9788
    • Cytoplasmic Membrane Score: 0.0006
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0203
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.014321
    • TAT(Tat/SPI): 0.002364
    • LIPO(Sec/SPII): 0.00298
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNKEQLEKMKNGKGFIAALDQSGGSTPKALKEYGVNEDQYSNEDEMFQLVHDMRTRVVTSPSFSPDKILGAILFEQTMDREVEGKYTADYLADKGVVPFLKVDKGLAEEQNGVQLMKPIDNLDSLLDRANERHIFGTKMRSNILELNEQGIKDVVEQQFEVAKQIIAKGLVPIIEPEVNINAKDKAEIEKVLKAELKKGLDSLNADQLVMLKLTIPTEPNLYKELAEHPNVVRVVVLSGGYSREKANELLKDNAELIASFSRALASDLRADQSKEEFDKALGDAVESIYDASVNKN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=JSNZ_002587&oldid=108228"