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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002500
  • pan locus tag?: SAUPAN006168000
  • symbol: JSNZ_002500
  • pan gene symbol?: frp
  • synonym:
  • product: NAD(P)H-dependent oxidoreductase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002500
  • symbol: JSNZ_002500
  • product: NAD(P)H-dependent oxidoreductase
  • replicon: chromosome
  • strand: -
  • coordinates: 2507617..2508288
  • length: 672
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGAGCAATATGAATCAAACAATTATGGATGCATTTCATTTCAGACATGCGACTAAGCAA
    TTCGATCCACAAAAGAAAGTTTCGAAAGAAGATTTTGAAACAATATTAGAGTCAGGTAGA
    TTGTCTCCAAGTTCTCTTGGGTTAGAACCTTGGAAGTTTGTCGTGATTCAAGATCAAGCG
    TTACGTGATGAATTAAAAGCGCACAGTTGGGGCGCAGCAAAACAATTAGATACAGCGAGC
    CATTTTGTGCTAATTTTTGCGCGTAAAAATGTAACGTCAAGATCACCGTATGTACAACAT
    ATGTTAAGAGATATTAAAAAATATGAGGCACAAACGATTCCAGCTGTTGAACAAAAATTC
    GATGCATTCCAAGCAGATTTCCATATTTCTGATAATGATCAAGCCTTGTATGACTGGTCA
    AGTAAACAAACGTATATTGCATTAGGCAATATGATGACGACAGCCGCATTGTTAGGTATT
    GATTCATGTCCGATGGAAGGTTTTAGTCTGGATACAGTGACAGACATTTTAGCAAATAAA
    GGGATCTTAGATACTGAGCAATTTGGTTTATCAGTGATGGTCGCATTTGGCTACAGACAA
    CAAGTGCCACCGAAAAATAAAACACGCCAAGCTTATGAAGATGTTATTGAATGGGTTGGA
    CCAAAAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    672

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002500
  • symbol: JSNZ_002500
  • description: NAD(P)H-dependent oxidoreductase
  • length: 223
  • theoretical pI: 5.94894
  • theoretical MW: 25358.6
  • GRAVY: -0.402691

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin 5,6-dimethylbenzimidazole synthase (TIGR02476; EC 1.14.99.40; HMM-score: 20)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    FMN-dep-NRtase (CL0529) Nitroreductase; Nitroreductase family (PF00881; HMM-score: 98.6)
    and 1 more
    TM1586_NiRdase; Putative TM nitroreductase (PF14512; HMM-score: 20.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9868
    • Cytoplasmic Membrane Score: 0.0046
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0086
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002464
    • TAT(Tat/SPI): 0.00023
    • LIPO(Sec/SPII): 0.000371
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKAHSWGAAKQLDTASHFVLIFARKNVTSRSPYVQHMLRDIKKYEAQTIPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVAFGYRQQVPPKNKTRQAYEDVIEWVGPKE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: Rex* (repression) regulon
    Rex*(TF)important in Energy metabolism;  regulation predicted or transferred from N315 and NCTC 8325  [1]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Hannes Wolfgramm, Larissa Milena Busch, Jöran Tebben, Henry Mehlan, Lisa Hagenau, Thomas Sura, Tilly Hoffmüller, Elisa Bludau, Manuela Gesell Salazar, Alexander Reder, Stephan Michalik, Leif Steil, Kristin Surmann, Ulrike Mäder, Silva Holtfreter, Uwe Völker
    Integrated genomic and proteomic analysis of the mouse-adapted Staphylococcus aureus strain JSNZ.
    Curr Res Microb Sci: 2025, 9;100489
    [PubMed:41146725] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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