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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002402
  • pan locus tag?: SAUPAN005971000
  • symbol: JSNZ_002402
  • pan gene symbol?: —
  • synonym:
  • product: ABC transporter ATP-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002402
  • symbol: JSNZ_002402
  • product: ABC transporter ATP-binding protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2398290..2400023
  • length: 1734
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGTTTCAAATTACATTTAAAATTTTAAACTGGATAAGACCATATAAAGCAAGAATGATT
    TTAGGATTTAGCATGTCATTTTTAAATGCTATTTTTATTGCGTTACCTATCTTTTTAGCT
    GCAAAAATATTTAATAATGTGCTATCTCATAAACCTATTTATATGAAAGATATATTGAAT
    GTTGTAATTATCATGGTTTTATTAGTGATTGGACGATTTATTACAGCATATTTCAAAAGC
    AAAAGCCATGAGAGCATCGCTTATGAAATGAGTGCGAAAGAACGTTTAGATATAGGGGAT
    AAATTGAAAAATGTAAGGTTAGGTTATTTTAATTCGCATCATTCAAATGAGTTAACAACA
    ATAGTAACAACAGATTTAACCTTTTTAGAAAACTTTGCTATGAAAATGGTGGACGTTGTT
    GTTAATGGATACATATTAATTACAGTACTCATATTGTCTCTACTTGTAGTTTCGTGGCAA
    GTATCATTATTAGCATGCATTGGCGTATTACTATCATTTTTTGCGATTCAATTATTAGAA
    AGAAAGAGTCGACAAAATGCGCCAGCGTATCATAATGTACAAAACCAATTAGTGGAAAAG
    GTATTGGAGGTTATTCGTGGTATTCAAGTAATAAAATCATTCGCGAAAGAAAATACGAGT
    CTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATG
    CAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATT
    GTATTAGTTGCATGCTTATTATATATGAATCATAGTATTGATTTACCTACCCTTATTATG
    ATTTCAATTTTTTCATTTGTGATATTTGATAGTGTTGAAAATATTAATAGTGCTGCACAC
    GTACTTGAAATGATAGATATGACGATAGATGATATTGAAAAGATAAAAAATGCTCCAGAA
    CTGGATGAGAATGGAAAAAATTTGACGATTAAAAATGAAAATATCGCTTTTCAAAACGTG
    AATTTTTCATATGATGATAAACAAGTGATAAAGAATGTGAATTTTGAGATACCTACACAA
    ACATCAACAGCAATAATTGGACCTTCAGGAAGTGGGAAATCTACATTATGTCACTTACTC
    TTGCGCTTTTATGATATCGATGATGGAAATATTCGCATCGATGGTGTTGATATTAAAGAT
    ATGACATTAAGTACGTTAATGTCGAAAATTAGTGCAGTATTTCAAAAGGTGTATTTATTT
    AATGATACGATTGAAAATAACATATTGTTTGGCAATCCAGGTGCAACGAAAGAAGAAATT
    ATTCGTGCAGCGAAGCAAGCATGTTGCCACGACTTCATCATGTCATTACCTGAGGGATAT
    CAAACAATGCTAAATGAAAAAGGCAATAATTTATCTGGTGGAGAAAGACAGAGAATTTCT
    ATCGCCCGGGCAATTTTGAAAGATGCACCAATTATTATTTTAGATGAAGCAACAGCAAGT
    ATTGACCCTGAAAATGAACAGCTGATTCAAACGGCAATTAATGAATTAAGTAAAGGCAAA
    ACAGTAATTACAATTGCACATAAACTTGAAACTATTAAAAATGCAGATCAGATTATAGTG
    CTCAATGAAGGTGAAATAATTCAAAAAGGTAGTCATGATGAATTAATTCGAAAACCAGGA
    ATGTATCAAGACTTTATAAGAATAAAAAGTAAATCAGCAGGCTGGAAATTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1734

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002402
  • symbol: JSNZ_002402
  • description: ABC transporter ATP-binding protein
  • length: 577
  • theoretical pI: 7.65239
  • theoretical MW: 65117.8
  • GRAVY: 0.185789

⊟Function[edit | edit source]

  • reaction:
    EC 7.-.-.-?  ExPASy
  • TIGRFAM:
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 368.6)
    Metabolism Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 368.6)
    ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 345.4)
    Metabolism Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 324.3)
    and 70 more
    thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 294.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01846; HMM-score: 289.8)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 278.8)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 278.8)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 263.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 263.2)
    Cellular processes Cellular processes Pathogenesis type I secretion system ATPase (TIGR03375; HMM-score: 259.3)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR03375; HMM-score: 259.3)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids glucan exporter ATP-binding protein (TIGR01192; EC 3.6.3.42; HMM-score: 256.4)
    thiol reductant ABC exporter, CydC subunit (TIGR02868; HMM-score: 238.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking ABC-type bacteriocin transporter (TIGR01193; HMM-score: 227.2)
    Genetic information processing Protein fate Protein modification and repair ABC-type bacteriocin transporter (TIGR01193; HMM-score: 227.2)
    Metabolism Transport and binding proteins Other ABC-type bacteriocin transporter (TIGR01193; HMM-score: 227.2)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01842; HMM-score: 203.1)
    Metabolism Transport and binding proteins Other multi drug resistance-associated protein (MRP) (TIGR00957; HMM-score: 153.3)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04520; EC 3.6.3.-; HMM-score: 149.2)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 142.4)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 140)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system (TIGR03864; HMM-score: 128.6)
    Metabolism Transport and binding proteins Amino acids, peptides and amines glycine betaine/L-proline transport ATP binding subunit (TIGR01186; HMM-score: 126.8)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 124.9)
    Cellular processes Cellular processes Toxin production and resistance putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 123.9)
    Metabolism Transport and binding proteins Unknown substrate putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 123.9)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 111.7)
    Cellular processes Cellular processes Cell division cell division ATP-binding protein FtsE (TIGR02673; HMM-score: 106.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtE (TIGR03410; HMM-score: 105.7)
    Metabolism Transport and binding proteins Anions cystic fibrosis transmembrane conductor regulator (CFTR) (TIGR01271; EC 3.6.3.49; HMM-score: 100.7)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 100.6)
    Metabolism Transport and binding proteins Other LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 100.6)
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, ATP-binding protein (TIGR02142; EC 3.6.3.29; HMM-score: 100.3)
    Metabolism Transport and binding proteins Other thiamine ABC transporter, ATP-binding protein (TIGR01277; EC 3.6.3.-; HMM-score: 98.3)
    Metabolism Transport and binding proteins Amino acids, peptides and amines polyamine ABC transporter, ATP-binding protein (TIGR01187; EC 3.6.3.31; HMM-score: 98.2)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, ATP-binding protein (TIGR02211; EC 3.6.3.-; HMM-score: 95.9)
    Metabolism Transport and binding proteins Other daunorubicin resistance ABC transporter, ATP-binding protein (TIGR01188; HMM-score: 94.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TIGR03265; HMM-score: 93.6)
    ABC exporter ATP-binding subunit, DevA family (TIGR02982; HMM-score: 91.7)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikE (TIGR02769; EC 3.6.3.24; HMM-score: 88.7)
    ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA (TIGR03005; HMM-score: 88.6)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikD (TIGR02770; HMM-score: 87.8)
    proposed F420-0 ABC transporter, ATP-binding protein (TIGR03873; HMM-score: 87.7)
    D-methionine ABC transporter, ATP-binding protein (TIGR02314; EC 3.6.3.-; HMM-score: 85.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 85.3)
    Metabolism Transport and binding proteins Amino acids, peptides and amines cyclic peptide transporter (TIGR01194; HMM-score: 83.1)
    Metabolism Transport and binding proteins Other cyclic peptide transporter (TIGR01194; HMM-score: 83.1)
    Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 81.8)
    gliding motility-associated ABC transporter ATP-binding subunit GldA (TIGR03522; HMM-score: 79.1)
    Metabolism Transport and binding proteins Other pigment precursor permease (TIGR00955; HMM-score: 78)
    Metabolism Transport and binding proteins Amino acids, peptides and amines choline ABC transporter, ATP-binding protein (TIGR03415; HMM-score: 78)
    phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 77.7)
    Cellular processes Cellular processes Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 76.7)
    Metabolism Transport and binding proteins Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 76.7)
    2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT (TIGR03258; HMM-score: 76.1)
    Metabolism Energy metabolism Methanogenesis methyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 76)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly ATPase SufC (TIGR01978; HMM-score: 69.8)
    lantibiotic protection ABC transporter, ATP-binding subunit (TIGR03740; HMM-score: 67.1)
    ATP-binding cassette protein, ChvD family (TIGR03719; HMM-score: 66.8)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-xylose ABC transporter, ATP-binding protein (TIGR02633; EC 3.6.3.17; HMM-score: 64.2)
    Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, ATP-binding subunit (TIGR03771; HMM-score: 59)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 58.4)
    Metabolism Transport and binding proteins Other heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 58.4)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit A (TIGR00630; EC 3.1.25.-; HMM-score: 55.5)
    Metabolism Transport and binding proteins Anions nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 54.8)
    Metabolism Transport and binding proteins Other nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 54.8)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids peroxysomal long chain fatty acyl transporter (TIGR00954; HMM-score: 51.7)
    Metabolism Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 45.2)
    Metabolism Transport and binding proteins Other rim ABC transporter (TIGR01257; HMM-score: 44.9)
    Metabolism Central intermediary metabolism Phosphorus compounds phosphonate C-P lyase system protein PhnK (TIGR02323; HMM-score: 34.4)
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 27.5)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 27.5)
    Genetic information processing Protein synthesis Translation factors ribosome small subunit-dependent GTPase A (TIGR00157; EC 3.6.-.-; HMM-score: 16.8)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 107.3)
    and 24 more
    ABC_membrane (CL0241) ABC_membrane; ABC transporter transmembrane region (PF00664; HMM-score: 61.7)
    P-loop_NTPase (CL0023) SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 43.5)
    AAA_22; AAA domain (PF13401; HMM-score: 27)
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 22.6)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 21.4)
    RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 20.7)
    AAA_24; AAA domain (PF13479; HMM-score: 17.4)
    ABC_ATPase; P-loop domain (PF09818; HMM-score: 17.2)
    AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 16.9)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 16.5)
    no clan defined DUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 16.4)
    P-loop_NTPase (CL0023) AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 16.1)
    AAA_18; AAA domain (PF13238; HMM-score: 16.1)
    nSTAND3; Novel STAND NTPase 3 (PF20720; HMM-score: 15.9)
    ATPase_I_AtpR (CL0478) ATP-synt_I; ATP synthase I chain (PF03899; HMM-score: 14.4)
    P-loop_NTPase (CL0023) AAA_14; AAA domain (PF13173; HMM-score: 13.8)
    AAA_23; AAA domain (PF13476; HMM-score: 13.4)
    PPV_E1_C; Papillomavirus helicase (PF00519; HMM-score: 13.3)
    SbcC_Walker_B; SbcC/RAD50-like, Walker B motif (PF13558; HMM-score: 13)
    DUF815; Protein of unknown function (DUF815) (PF05673; HMM-score: 12.2)
    nSTAND1; Novel STAND NTPase 1 (PF20703; HMM-score: 12)
    MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 11.4)
    Saposin_like (CL0707) SapB_1; Saposin-like type B, region 1 (PF05184; HMM-score: 9.9)
    no clan defined SP_C-Propep; Surfactant protein C, N terminal propeptide (PF08999; HMM-score: 6.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9989
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0011
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009781
    • TAT(Tat/SPI): 0.000523
    • LIPO(Sec/SPII): 0.009187
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MFQITFKILNWIRPYKARMILGFSMSFLNAIFIALPIFLAAKIFNNVLSHKPIYMKDILNVVIIMVLLVIGRFITAYFKSKSHESIAYEMSAKERLDIGDKLKNVRLGYFNSHHSNELTTIVTTDLTFLENFAMKMVDVVVNGYILITVLILSLLVVSWQVSLLACIGVLLSFFAIQLLERKSRQNAPAYHNVQNQLVEKVLEVIRGIQVIKSFAKENTSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMNHSIDLPTLIMISIFSFVIFDSVENINSAAHVLEMIDMTIDDIEKIKNAPELDENGKNLTIKNENIAFQNVNFSYDDKQVIKNVNFEIPTQTSTAIIGPSGSGKSTLCHLLLRFYDIDDGNIRIDGVDIKDMTLSTLMSKISAVFQKVYLFNDTIENNILFGNPGATKEEIIRAAKQACCHDFIMSLPEGYQTMLNEKGNNLSGGERQRISIARAILKDAPIIILDEATASIDPENEQLIQTAINELSKGKTVITIAHKLETIKNADQIIVLNEGEIIQKGSHDELIRKPGMYQDFIRIKSKSAGWKL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: Fur* (repression) regulon
    Fur*(TF)important in Iron homeostasis;  regulation predicted or transferred from N315 and NCTC 8325  [2]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)
  2. ↑ Hannes Wolfgramm, Larissa Milena Busch, Jöran Tebben, Henry Mehlan, Lisa Hagenau, Thomas Sura, Tilly Hoffmüller, Elisa Bludau, Manuela Gesell Salazar, Alexander Reder, Stephan Michalik, Leif Steil, Kristin Surmann, Ulrike Mäder, Silva Holtfreter, Uwe Völker
    Integrated genomic and proteomic analysis of the mouse-adapted Staphylococcus aureus strain JSNZ.
    Curr Res Microb Sci: 2025, 9;100489
    [PubMed:41146725] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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