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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002336
  • pan locus tag?: SAUPAN005880000
  • symbol: JSNZ_002336
  • pan gene symbol?: —
  • synonym:
  • product: CDP-glycerol glycerophosphotransferase family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002336
  • symbol: JSNZ_002336
  • product: CDP-glycerol glycerophosphotransferase family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2334223..2335896
  • length: 1674
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGATTAAACAGATAAATGTTTCTAATATGCAAAAGTTTGAATCTCAATTAATGAAAGCT
    CAGTCTGAAGGTTATACACATGTCGTTCCATATGCAAATGAGATAATGATTTATCAATCG
    ATGTTAGATGCGGTTCAATTATATCCTAAGTCTATCGTGGTTGATTATACTGTGGATGGA
    CAATACAAAAATGATTGTCACTATTTCGGTCAATCATCGATCAACATTGCCGATTGGGCT
    CAAAACAATAATTATTATCCTAACCTGATATATGCGATTCAACAGACTCTTGATTTAATA
    CATTATTACTCTGTAGAAACGATTTTCGATTTAGCTTTATTGACACTTCTGAAAGGTGAT
    TTATCAATCGATGGTCATGTCGTTTTTGATTTTAAAGCCCCTATAGCAACAAGTGCTTCA
    ATATGGGGAACTATTAAAACTATTGAAGATTTTGATATGATGTCTCAGTTTTATTTGAAT
    AAAATGGCTTATATTGATCATCATCCTATACCTTTTCGCAACCTTTTTATCGAGGATTCA
    GAACAACTTAATTCGCCAGATAATTGGTTGTATTCTACCAAGTTTATGCTACCTAAATGG
    TTATATAAAATAGCAAAGCAACGTGCTGATAACAAACAATTACAAAACTTCGGCCTGTAT
    ACGAAGCAACCAAACGTTTTAAAAGATCACATCGTTTTTATCGGTGATCATCATCAATAT
    ATAGGTAATTCAAAATATTTATTTACTTACTTCGTTAAACATAATCCAATGACTGCCTGT
    TATTTTGTTACTGACGATCGTCGCGGACCACATTTCATATCACCTAAGTCTGAAAAAGCT
    GACGAATTGATTAACAGCGCACGCGTAGTTATAGTTGAAAATGATATACCTGAAACGTTA
    CAACCAAACGGTACTTTAATTCAATTACATCAAGGCACACCAATAATGCAATTATTTTTA
    GATAGTAAAGAGCCTATTAAAAATATAGAAACACCTTTTTATCGTGCTAAAAGGTATAAT
    CGCTGGTTGCAATTCGATTATGTTATACATTCTGCTGATGATATTAGCCACTTTTATCAA
    ACGGCTTTTCCTAGTCACCAAGCAAATGTATTGGCTTATGGTAATCCTAAACACCAATAT
    TTACTACAAAAGCGTAACGAAAGTACTACTCAACAACAGTATAAGAAATCGTTTAAAATA
    AATGATCAAAAACCAGTTTTATTATACGCACCTATTGGATTAGTGAGTGCGCAACAATTA
    CCACTATCAGATGCTTTATTCAAAGCCTATCATGTTGTGGTTCAGGGTGTTGATGAAGCG
    ATGTTACCAGAAGAGGCGCTTGTTGCACCAAAGTATCTTAGTGCTCAAGACTTAATTCTA
    ATGTCTGATGTCGTTATCACTGATTACTCAAATATAATATTTGATGCGATGGCTATAGAC
    AAAACAGTAGCATTATACACTCCAAATCACAGTCAATACATTGAGTCTCAAGGTGTTAAC
    GAAGATATTTGGCGTCATCTATCAAAAATTTGGTATACAGACCGACAATTATTAATTAAT
    AATTTAATTTCCCAGGCAATACCAGTGATTAAATATCCACAAATACAACATAAAGAACAA
    CCATTAGAATCTATTTCACAACTTATATTGTCTAAGATGACATCTAATCAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1674

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002336
  • symbol: JSNZ_002336
  • description: CDP-glycerol glycerophosphotransferase family protein
  • length: 557
  • theoretical pI: 6.5113
  • theoretical MW: 64551.2
  • GRAVY: -0.298025

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage-associated protein, BcepMu gp16 family (TIGR04111; HMM-score: 16.8)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    GT-B (CL0113) Glyphos_transf; CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase (PF04464; HMM-score: 100.2)
    and 1 more
    no clan defined TFIIIC_sub6; TFIIIC subunit triple barrel domain (PF10419; HMM-score: 12.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8166
    • Cytoplasmic Membrane Score: 0.1393
    • Cell wall & surface Score: 0.0009
    • Extracellular Score: 0.0432
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009653
    • TAT(Tat/SPI): 0.000572
    • LIPO(Sec/SPII): 0.000854
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MIKQINVSNMQKFESQLMKAQSEGYTHVVPYANEIMIYQSMLDAVQLYPKSIVVDYTVDGQYKNDCHYFGQSSINIADWAQNNNYYPNLIYAIQQTLDLIHYYSVETIFDLALLTLLKGDLSIDGHVVFDFKAPIATSASIWGTIKTIEDFDMMSQFYLNKMAYIDHHPIPFRNLFIEDSEQLNSPDNWLYSTKFMLPKWLYKIAKQRADNKQLQNFGLYTKQPNVLKDHIVFIGDHHQYIGNSKYLFTYFVKHNPMTACYFVTDDRRGPHFISPKSEKADELINSARVVIVENDIPETLQPNGTLIQLHQGTPIMQLFLDSKEPIKNIETPFYRAKRYNRWLQFDYVIHSADDISHFYQTAFPSHQANVLAYGNPKHQYLLQKRNESTTQQQYKKSFKINDQKPVLLYAPIGLVSAQQLPLSDALFKAYHVVVQGVDEAMLPEEALVAPKYLSAQDLILMSDVVITDYSNIIFDAMAIDKTVALYTPNHSQYIESQGVNEDIWRHLSKIWYTDRQLLINNLISQAIPVIKYPQIQHKEQPLESISQLILSKMTSNQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: Rex* (repression) regulon
    Rex*(TF)important in Energy metabolism;  regulation predicted or transferred from N315 and NCTC 8325  [1]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Hannes Wolfgramm, Larissa Milena Busch, Jöran Tebben, Henry Mehlan, Lisa Hagenau, Thomas Sura, Tilly Hoffmüller, Elisa Bludau, Manuela Gesell Salazar, Alexander Reder, Stephan Michalik, Leif Steil, Kristin Surmann, Ulrike Mäder, Silva Holtfreter, Uwe Völker
    Integrated genomic and proteomic analysis of the mouse-adapted Staphylococcus aureus strain JSNZ.
    Curr Res Microb Sci: 2025, 9;100489
    [PubMed:41146725] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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