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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001999
  • pan locus tag?: SAUPAN005290000
  • symbol: JSNZ_001999
  • pan gene symbol?: —
  • synonym:
  • product: YeeE/YedE family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001999
  • symbol: JSNZ_001999
  • product: YeeE/YedE family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2012239..2013312
  • length: 1074
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGTGGATGATTTTTAGTGGCTTAATTGTCGGGGGACTCTTAGGTTTTGTCATGCAAAGA
    ACAAGATTTTGTTTAACAGGTGGCTTTCGAGATATGTATGTGCAAAAGAATAATAAGATG
    TTCTATGCATTATTAATCGCTATTACTATTCAAAGTATAGGATTATTGATTTTGACGGCA
    ACAGATATTTTAAAAATTCCTGCACATAGTTTTCCAATATTGGGAACAATTATAGGTTCT
    TTTATTTTTGGAATTGGAATAGTATTGGCTGGAGGGTGTGCAACAGGTACTTGGTATCGC
    GCTGGTGAAGGGCTAATTGGTAGTTGGATTGCATTAGTATTATATGCTGTTACTGCAGCA
    ATCACTAAAACAGGGATTTTAAAGCCAGTAATGGATAAAATTAATCAACCAACGAATGTA
    AATAGTGATATGTCTCAAACAACTGGCATTCCGTTTTGGGGATTAGTCGTTATATTAACT
    ATAATCACCATTTTTCTAGTTGTAAGAACACTCAATAATAAGAAAGTTCGAGTTGCTGTT
    CCAAAACTAAAGCAACGTTATACAGGTATTAGATATTACCTTTTCGAAAAACGATACCAT
    CCATTTATTGCAGCAATTGTAATTGGACTTATCGCACTCTTAGCTTGGCCAATGAGTGCA
    TCAACTGGAAGAAATGACGGTTTAGGTATAACAACGCCATCAGCAAATTTAGTACACTTT
    TTGATTACAGGTGAAACTAAATTTATTGATTGGGGTGTCTTTTTAGTTCTAGGAATTTTC
    ATTGGTTCATATATTGCAGCTAGAGGATCAAGAGAATTTAAATGGCGATTGCCAGATAAG
    ATTACAATACGAAACAGTGCTATTGGTGGCATATGTATGGGATTTGGTGCGTCAGTTGCT
    GGTGGTTGTTCTATCGGTAACGGTTTGGTTGAAACAGCAACGATGACTTGGCAAGGATGG
    ATTGCGCTAGCATCAATGATAGTTGGTGTATGGACAATGAGTCATTTTATCTTTGTTCGT
    CCAATGAAAAAGTACAACAACAATCTGCAAAGGTTAAACAGCAAACGCAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1074

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001999
  • symbol: JSNZ_001999
  • description: YeeE/YedE family protein
  • length: 357
  • theoretical pI: 10.8249
  • theoretical MW: 39187.5
  • GRAVY: 0.553782

⊟Function[edit | edit source]

  • TIGRFAM:
    putative selenium metabolism protein, YedE family (TIGR04112; HMM-score: 47.6)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    YeeE (CL0710) Sulf_transp; Sulphur transport (PF04143; HMM-score: 377.7)
    and 1 more
    no clan defined Spore_YhaL; Sporulation protein YhaL (PF14147; HMM-score: 9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 1
    • Cell wall & surface Score: 0
    • Extracellular Score: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011428
    • TAT(Tat/SPI): 0.000555
    • LIPO(Sec/SPII): 0.011788
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MWMIFSGLIVGGLLGFVMQRTRFCLTGGFRDMYVQKNNKMFYALLIAITIQSIGLLILTATDILKIPAHSFPILGTIIGSFIFGIGIVLAGGCATGTWYRAGEGLIGSWIALVLYAVTAAITKTGILKPVMDKINQPTNVNSDMSQTTGIPFWGLVVILTIITIFLVVRTLNNKKVRVAVPKLKQRYTGIRYYLFEKRYHPFIAAIVIGLIALLAWPMSASTGRNDGLGITTPSANLVHFLITGETKFIDWGVFLVLGIFIGSYIAARGSREFKWRLPDKITIRNSAIGGICMGFGASVAGGCSIGNGLVETATMTWQGWIALASMIVGVWTMSHFIFVRPMKKYNNNLQRLNSKRK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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