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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001930
- pan locus tag?: SAUPAN004925000
- symbol: JSNZ_001930
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001930
- symbol: JSNZ_001930
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1943641..1943787
- length: 147
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121TTGATTGCTGACTTAGATGCAATCGAGGGTTTATTTATATCTATAGAAGTCATATTACTT
TTAACTTTATTCATTGTACATGTTAATGGTAAAAATATTAATTTTATTAATGCGTTAGCT
TTAATTATATTAAGGCAAACTGTATAA60
120
147
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001930
- symbol: JSNZ_001930
- description: hypothetical protein
- length: 48
- theoretical pI: 4.53867
- theoretical MW: 5319.42
- GRAVY: 1.40417
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for NCTC8325
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helix: 1
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0064
- Cytoplasmic Membrane Score: 0.8887
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.1048
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.02063
- TAT(Tat/SPI): 0.00062
- LIPO(Sec/SPII): 0.006091
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MIADLDAIEGLFISIEVILLLTLFIVHVNGKNINFINALALIILRQTV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_001930 < gatB < gatA < gatC
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)