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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001812
  • pan locus tag?: SAUPAN004570000
  • symbol: JSNZ_001812
  • pan gene symbol?: —
  • synonym:
  • product: DUF4888 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001812
  • symbol: JSNZ_001812
  • product: DUF4888 domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1859074..1859655
  • length: 582
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAATACAAAATTTTTAGGTAAAACATTAGTAGCAGGTGCTTTAGTATTAACAACATTA
    GGAACAGGCTTACATTCTTCATACTTAGGATTAGATACAAATAAAATTGTTAAAACAGCT
    AAAGCAGAAGAAAAAATGACAGAAGGTCAATTGTGGTTAGGCGTTAAAAAATCTCTAATT
    GATTCAAATATTATTAGTGGTAACGAAAATGAGGAGATTAAAGTAACATATGTGAATAAA
    GATGGACATTCAACTAATGTCACAGCCTATGGTAATAATACTGATGATTTTTTAAGTACT
    CCAAGTAATTTTTCTAAACTTAAAGAAATTGACTTGAAAAAAGATAATGTACCATCAGAT
    GATTTTAATACTACTGTTAGTGGTGAGGATAGTTGGAAAACACTTACATCTAAATTAAAG
    GAAAAAGGTTTGGTTACAGATGGACAAACAGTAACTATTCATTGTAATGATAAGTCTGAC
    AATACAAAATCATCTGTTTCAGGTAAAGTAGGAGCAGATCTGACAAGTGGCAATGGAACT
    ACATTCAAAAAACGCTTTATTGATAAAATCACAATTGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    582

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001812
  • symbol: JSNZ_001812
  • description: DUF4888 domain-containing protein
  • length: 193
  • theoretical pI: 7.59953
  • theoretical MW: 20886.3
  • GRAVY: -0.520207

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined DUF4888; Domain of unknown function (DUF4888) (PF16229; HMM-score: 119.3)
    and 3 more
    DUF4978; Domain of unknown function (DUF4978) (PF16349; HMM-score: 14.5)
    PsbJ; PsbJ (PF01788; HMM-score: 12.1)
    HTH (CL0123) F-93_WHD; F-93, winged-helix domain (PF22194; HMM-score: 11.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.0004
    • Cell wall & surface Score: 0.0096
    • Extracellular Score: 0.99
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 42 aa
    • SP(Sec/SPI): 0.731757
    • TAT(Tat/SPI): 0.024022
    • LIPO(Sec/SPII): 0.047385
    • Cleavage Site: CS pos: 42-43. AKA-EE. Pr: 0.2809
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNTKFLGKTLVAGALVLTTLGTGLHSSYLGLDTNKIVKTAKAEEKMTEGQLWLGVKKSLIDSNIISGNENEEIKVTYVNKDGHSTNVTAYGNNTDDFLSTPSNFSKLKEIDLKKDNVPSDDFNTTVSGEDSWKTLTSKLKEKGLVTDGQTVTIHCNDKSDNTKSSVSGKVGADLTSGNGTTFKKRFIDKITID

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulators: CcpA regulon, SaeR (activation) regulon
    CcpA(TF)important in Carbon catabolism;  regulation predicted or transferred from N315 and NCTC 8325  [1]
    SaeR(TF)important in Virulence;  regulation predicted or transferred from N315 and NCTC 8325  [1]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ 1.0 1.1 Hannes Wolfgramm, Larissa Milena Busch, Jöran Tebben, Henry Mehlan, Lisa Hagenau, Thomas Sura, Tilly Hoffmüller, Elisa Bludau, Manuela Gesell Salazar, Alexander Reder, Stephan Michalik, Leif Steil, Kristin Surmann, Ulrike Mäder, Silva Holtfreter, Uwe Völker
    Integrated genomic and proteomic analysis of the mouse-adapted Staphylococcus aureus strain JSNZ.
    Curr Res Microb Sci: 2025, 9;100489
    [PubMed:41146725] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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