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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001732
  • pan locus tag?: SAUPAN004409000
  • symbol: ytpR
  • pan gene symbol?: —
  • synonym:
  • product: YtpR family tRNA-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001732
  • symbol: ytpR
  • product: YtpR family tRNA-binding protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1779440..1780036
  • length: 597
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAATTTATTTTACAATCCTAAATATGTAGGAGATGTCGCATTTTTACAAATTGAACCA
    GTTGAAGGTGAATTAAACTACAATAAAAAAGGTAATGTTGTTGAAATTACTAATGAAGGT
    AATGTTGTAGGTTATAATATTTTTGAAATCTCAAAAGATATAACAATTGAAGAAAAAGGT
    CATATTAAATTAACTGATGAACTTGTAAATGTATTCCAAAAGCGTATTTCAGAAGCTGGT
    TTTGATTATAAATTAAATGCTGATCTATCACCGAAATTTGTAGTTGGCTACGTTGAAACT
    AAAGACAAACATCCTGATGCAGATAAATTAAGTGTACTAAATGTAAACGTTGGAAATGAC
    ACATTACAAATTGTATGTGGCGCGCCTAACGTTGAAGCTGGACAGAAAGTTGTTGTTGCT
    AAAGTAGGTGCAGTGATGCCTAGCGGTATGGTAATTAAAGATGCTGAATTACGTGGTGTT
    GCCTCAAGCGGTATGATTTGTTCAATGAAAGAATTGAATTTACCTAATGCACCTGAAGAA
    AAAGGTATTATGGTATTAAATGACAGCTATGAAATTGGACAAGCATTTTTTGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    597

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001732
  • symbol: YtpR
  • description: YtpR family tRNA-binding protein
  • length: 198
  • theoretical pI: 4.4561
  • theoretical MW: 21689.7
  • GRAVY: -0.113636

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis tRNA aminoacylation phenylalanine--tRNA ligase, beta subunit (TIGR00472; EC 6.1.1.20; HMM-score: 145)
    and 1 more
    Genetic information processing Protein synthesis tRNA aminoacylation methionine--tRNA ligase, beta subunit (TIGR00399; EC 6.1.1.10; HMM-score: 24.4)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    OB (CL0021) tRNA_bind; Putative tRNA binding domain (PF01588; HMM-score: 80.9)
    no clan defined DUF4479; Domain of unknown function (DUF4479) (PF14794; HMM-score: 78.5)
    and 1 more
    LlgE_F_G_D1; Flagellar hook protein FlgE/F/G D1 domain (PF22692; HMM-score: 15)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9946
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0052
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008349
    • TAT(Tat/SPI): 0.000172
    • LIPO(Sec/SPII): 0.000992
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVGYNIFEISKDITIEEKGHIKLTDELVNVFQKRISEAGFDYKLNADLSPKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNAPEEKGIMVLNDSYEIGQAFFE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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