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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001575
- pan locus tag?: SAUPAN004171000
- symbol: lepA
- pan gene symbol?: lepA
- synonym:
- product: translation elongation factor 4
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001575
- symbol: lepA
- product: translation elongation factor 4
- replicon: chromosome
- strand: -
- coordinates: 1611753..1613576
- length: 1824
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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 1801ATGGATAATGAGCAACGCTTAAAAAGAAGAGAGAATATAAGGAATTTCTCGATTATAGCA
 CATATTGACCACGGAAAATCTACATTGGCTGATAGAATTTTAGAAAATACCAAATCAGTT
 GAAACAAGAGATATGCAAGATCAGTTACTAGATTCAATGGATTTAGAAAGAGAACGTGGT
 ATTACAATCAAATTAAACGCAGTTCGTTTAAAGTACGAAGCTAAAGATGGAAATACTTAT
 ACATTCCATTTAATCGATACGCCTGGACACGTCGATTTTACATATGAAGTGTCACGTTCT
 TTGGCAGCTTGTGAGGGTGCGATTTTAGTAGTAGATGCGGCTCAAGGTATCGAAGCACAA
 ACATTAGCAAATGTTTATTTGGCATTAGATAATGAGTTAGAGTTAATGCCTGTTATTAAC
 AAAATTGATTTACCTGCTGCAGAACCTGAACGCGTGAAACAAGAAATTGAAGATATGATA
 GGTTTAGACCAAGACGATGTTGTTTTAGCAAGTGCTAAATCTAACATTGGAATTGAAGAG
 ATACTAGAGAAAATAGTTGAAGTTGTGCCAGCTCCAGATGGTGACCCAGAAGCACCACTA
 AAAGCATTAATATTTGATTCTGAGTATGATCCATATAGAGGGGTAATTTCATCGATAAGA
 ATTGTAGACGGTGTTGTTAAAGCCGGAGATAAAATTCGAATGATGGCCACTGGTAAAGAG
 TTCGAAGTAACAGAAGTTGGAATTAATACACCTAAGCAGCTTCCAGTTGATGAATTAACA
 GTTGGTGATGTTGGTTATATTATTGCAAGTATTAAAAATGTTGATGATTCTAGGGTTGGT
 GACACCATCACATTAGCTAGTAGACCTGCATCAGAACCATTGCAAGGTTATAAGAAAATG
 AATCCAATGGTATATTGCGGACTGTTCCCAATAGATAACAAAAATTATAATGATTTAAGA
 GAAGCATTAGAAAAATTACAATTGAATGATGCATCATTAGAATTTGAGCCTGAATCGTCA
 CAAGCATTAGGTTTTGGTTATAGAACTGGTTTCTTAGGTATGTTACACATGGAAATAATT
 CAAGAAAGAATTGAAAGAGAATTTGGTATTGAATTAATTGCAACCGCACCATCTGTAATT
 TATCAATGTATTTTAAGGGACGGTTCAGAAGTGACGGTTGATAACCCAGCACAAATGCCA
 GATCGTGATAAAATTGATAAAATATTTGAGCCATATGTTCGTGCAACTATGATGGTTCCA
 AATGACTATGTAGGTGCAGTAATGGAATTATGTCAACGTAAACGTGGACAATTTATAAAT
 ATGGACTATTTAGATGATATTCGTGTAAATATTGTTTATGAATTACCTTTAGCTGAAGTT
 GTATTTGATTTCTTCGATCAACTTAAATCTAATACTAAAGGATATGCATCATTTGATTAT
 GAATTCATCGAAAATAAAGAAAGTAATTTAGTCAAGATGGATATTTTATTAAACGGTGAT
 AAAGTGGATGCGCTAAGCTTCATAGTTCATAGAGATTTTGCATATGAACGTGGTAAAGCA
 TTAGTTGAAAAACTTAAAACGTTAATTCCAAGACAGCAATTTGAAGTACCTGTACAGGCT
 GCAATAGGACAAAAAATTGTAGCGCGTACAAATATTAAATCAATGGGTAAAAACGTTTTA
 GCTAAATGTTATGGCGGTGACATAAGCCGTAAACGTAAATTACTTGAAAAACAAAAAGCA
 GGTAAAGCTAAGATGAAAGCAGTTGGTAATGTTGAAATTCCACAGGATGCTTTCTTGGCT
 GTGTTGAAAATGGATGACGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001575
- symbol: LepA
- description: translation elongation factor 4
- length: 607
- theoretical pI: 4.59347
- theoretical MW: 68206.7
- GRAVY: -0.262109
⊟Function[edit | edit source]
- reaction: EC 3.6.5.n1? ExPASyElongation factor 4 GTP + H2O = GDP + phosphate
- TIGRFAM: Unknown function General elongation factor 4 (TIGR01393; EC 3.6.5.-; HMM-score: 1014.2)and 20 moreCellular processes Adaptations to atypical conditions GTP-binding protein TypA/BipA (TIGR01394; HMM-score: 216.3)Protein synthesis Translation factors GTP-binding protein TypA/BipA (TIGR01394; HMM-score: 216.3)Regulatory functions Other GTP-binding protein TypA/BipA (TIGR01394; HMM-score: 216.3)Protein synthesis Translation factors translation elongation factor G (TIGR00484; HMM-score: 198.8)Protein synthesis Translation factors translation elongation factor aEF-2 (TIGR00490; HMM-score: 179.6)Protein synthesis Translation factors peptide chain release factor 3 (TIGR00503; HMM-score: 98)Protein synthesis Translation factors translation initiation factor IF-2 (TIGR00487; HMM-score: 87.1)Protein synthesis Translation factors translation elongation factor Tu (TIGR00485; HMM-score: 74.2)Unknown function General small GTP-binding protein domain (TIGR00231; HMM-score: 72.3)Protein synthesis Translation factors selenocysteine-specific translation elongation factor (TIGR00475; HMM-score: 68.4)Protein synthesis Translation factors translation elongation factor EF-1, subunit alpha (TIGR00483; HMM-score: 56)Central intermediary metabolism Sulfur metabolism sulfate adenylyltransferase, large subunit (TIGR02034; EC 2.7.7.4; HMM-score: 54.7)translation initiation factor 2, gamma subunit (TIGR03680; HMM-score: 42.7)Protein synthesis Translation factors translation initiation factor aIF-2 (TIGR00491; HMM-score: 35.4)Protein synthesis Other ribosome-associated GTPase EngA (TIGR03594; HMM-score: 34)Protein fate Protein modification and repair [FeFe] hydrogenase H-cluster maturation GTPase HydF (TIGR03918; HMM-score: 19.8)Energy metabolism Amino acids and amines ethanolamine utilization protein, EutP (TIGR02528; HMM-score: 18.8)Unknown function General GTP-binding protein HflX (TIGR03156; HMM-score: 18.7)Protein synthesis Other ribosome biogenesis GTPase YqeH (TIGR03597; HMM-score: 16.7)Protein synthesis Other ribosome biogenesis GTP-binding protein YsxC (TIGR03598; HMM-score: 16)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: P-loop_NTPase (CL0023) GTP_EFTU; Elongation factor Tu GTP binding domain (PF00009; HMM-score: 190.7)no clan defined LepA_C; GTP-binding protein LepA C-terminus (PF06421; HMM-score: 167.1)and 10 moreEF-G_C (CL0437) EFG_C; Elongation factor G C-terminus (PF00679; HMM-score: 83.2)ALR_C-like (CL0866) GTP_EFTU_D2; Elongation factor Tu domain 2 (PF03144; HMM-score: 56.5)EF-G_D2; Elongation factor G domain 2 (PF22042; HMM-score: 28.6)EF-G_C (CL0437) EFG_III; Elongation Factor G, domain III (PF14492; HMM-score: 26.9)P-loop_NTPase (CL0023) MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 21.6)Ras; Ras family (PF00071; HMM-score: 20.3)no clan defined MMR_HSR1_Xtn; C-terminal region of MMR_HSR1 domain (PF16897; HMM-score: 17.2)Adeno_E3_15_3; Adenovirus 15.3kD protein in E3 region (PF03307; HMM-score: 15.5)EF-G_C (CL0437) RF3_C; Class II release factor RF3, C-terminal domain (PF16658; HMM-score: 15.3)P-loop_NTPase (CL0023) SRPRB; Signal recognition particle receptor beta subunit (PF09439; HMM-score: 14.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane- Cytoplasmic Score: 1.05
- Cytoplasmic Membrane Score: 8.78
- Cellwall Score: 0.08
- Extracellular Score: 0.09
- Internal Helices: 0
 
- DeepLocPro: Cytoplasmic- Cytoplasmic Score: 0.7742
- Cytoplasmic Membrane Score: 0.1593
- Cell wall & surface Score: 0.0002
- Extracellular Score: 0.0663
 
- LocateP:
- SignalP: no predicted signal peptide- SP(Sec/SPI): 0.005084
- TAT(Tat/SPI): 0.000787
- LIPO(Sec/SPII): 0.000635
 
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELMPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]