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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001473
  • pan locus tag?: SAUPAN003953000
  • symbol: JSNZ_001473
  • pan gene symbol?: —
  • synonym:
  • product: DUF1672 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001473
  • symbol: JSNZ_001473
  • product: DUF1672 domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1517287..1518201
  • length: 915
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGCTTAAAAAAGCAAAATTTATCTTAATGGCAACGATACTACTATCAGGATGTTCAACT
    ACCAATAACGAATCCAACAAAGAAACAAAATCTGTACCAGAAGAAATGGAAGCTTCCAAA
    TATGAAGGACAAGGCTTTCAACCACCTGCAGAAAAAGATGCGATTGAATTTGCGAAGAAG
    CATAAAGATAAAATAGCTAAACGTGGCGAACAATTTTTTATGGATAACTTCGGTCTAAAA
    GTTAAAGCTACCAATGTTGTAGGTAGTGGCGACGGTGTAGAAGTATTCGTGCATTGTGAT
    GACCACGACATCGTATTTAATGCGAGTATTCCATTTGACAAATCAATTATTGACAGTAAT
    AGCTCATTAAGAAGTGAGGACAAAGGCGATGATATGAGTACTTTAGTTGGTACAGTGTTG
    AGTGGCTTTGAATATCGAACACAAAAAGAAAAGTATGACAATTTATATAAATTTTTTAAA
    GATAATGAAGAGAAATACCAATATACAGGATTTACAAAAGAGGCAATTAACAAGACACAA
    AATAGTGGATATGAAAATGAATATTTTTATATTTCGACTATACCATATAATTTAACTGAG
    TATAGAAACTATTTTGAGCCATTGTTAAACAAAAGTAACAGTGAATTTTCAAAAGAAATG
    TCAAATGTTAAGAAGCAATTAAAAGATAAGTCGAAAGTATCGGTAACTACTACTCTATTT
    AGTAAAAATAAGAACTATACTAAAAAAAGTAACAGTGAAAATGTAATAAAAATGGCAGAA
    GAAATAAAAAAAGAAAAAGATTTACCAACTGATATAGATTTTAGTATACAATTTTCAGAC
    AATAAAATAAATACGATTAAACCAAATTATAACGGTGAAAGCACTTCAGAATATGGTGTG
    TTTGATCAAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    915

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001473
  • symbol: JSNZ_001473
  • description: DUF1672 domain-containing protein
  • length: 304
  • theoretical pI: 5.35861
  • theoretical MW: 34818.6
  • GRAVY: -0.851974

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination sporulation lipoprotein, YhcN/YlaJ family (TIGR02898; HMM-score: 11.8)
  • TheSEED: data available for COL, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined DUF1672; Protein of unknown function (DUF1672) (PF07901; HMM-score: 469.3)
    and 1 more
    KNTase_C (CL0291) RnlA-toxin_DBD; RNase LS, bacterial toxin DBD domain (PF19034; HMM-score: 8.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0021
    • Cytoplasmic Membrane Score: 0.1515
    • Cell wall & surface Score: 0.0138
    • Extracellular Score: 0.8325
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 17 aa
    • SP(Sec/SPI): 0.000366
    • TAT(Tat/SPI): 0.000056
    • LIPO(Sec/SPII): 0.999395
    • Cleavage Site: CS pos: 17-18. LSG-CS. Pr: 0.9999
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLKKAKFILMATILLSGCSTTNNESNKETKSVPEEMEASKYEGQGFQPPAEKDAIEFAKKHKDKIAKRGEQFFMDNFGLKVKATNVVGSGDGVEVFVHCDDHDIVFNASIPFDKSIIDSNSSLRSEDKGDDMSTLVGTVLSGFEYRTQKEKYDNLYKFFKDNEEKYQYTGFTKEAINKTQNSGYENEYFYISTIPYNLTEYRNYFEPLLNKSNSEFSKEMSNVKKQLKDKSKVSVTTTLFSKNKNYTKKSNSENVIKMAEEIKKEKDLPTDIDFSIQFSDNKINTIKPNYNGESTSEYGVFDQE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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