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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001136
- pan locus tag?: SAUPAN003430000
- symbol: arcC
- pan gene symbol?: arcC1
- synonym:
- product: carbamate kinase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001136
- symbol: arcC
- product: carbamate kinase
- replicon: chromosome
- strand: +
- coordinates: 1136723..1137655
- length: 933
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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901ATGGCGAAAATAGTAGTAGCATTAGGTGGTAATGCTTTAGGAAAATCACCTCAAGAACAA
CTCGAGCTTGTTAAAAATACATCGAAATCATTAGTAGGATTAATAACAAAAGGACATGAG
ATTGTTATTAGTCATGGTAATGGACCACAGGTTGGAAGCATTAATTTGGGACTTAACTAT
GCTGCAGAACATAACCAAGGTCCGGCATTTCCATTTGCTGAATGTGGCGCAATGAGTCAA
GCTTACATCGGCTATCAATTACAAGAAAGCTTACAAAATGAATTGCATTCTATTGGAATG
GATAAACAAGTGGTAACACTAGTGACACAAGTTGAAGTTGATGAAAATGATCCGGCATTT
AACAATCCTTCAAAACCAATTGGGTTATTTTACAACAAAGAAGAAGCTGAACAAATTCAA
AAAGAAAAAGGATTTATATTTGTTGAAGATGCTGGAAGAGGATATAGACGCGTTGTTCCT
TCACCACAACCCATCTCTATTATTGAATTAGAGAGTATTAAAACACTTATTAAAAATGAT
ACACTCGTTATTGCTGCTGGCGGTGGAGGTATACCAGTAATTAGAGAGCAACATGATGGT
TTTAAAGGTATTGATGCAGTTATAGACAAAGATAAAACAAGTGCATTGTTGGGTGCTAAT
ATTCAATGCGATCAATTGATTATTTTAACAGCAATTGATTATGTATATATTAATTTTAAC
ACTGAAAACCAACAGCCTTTGAAAACAACAAATGTTGATGAATTAAAACGATATATAGAC
GAAAATCAATTTGCAAAAGGAAGTATGTTACCAAAAATTGAAGCAGCCATATCATTTATT
GAAAACAATCCAAAAGGAAGTGTGCTTATAACATCATTAAATGAATTAGATGCTGCCTTA
GAGGGTAAAGTAGGTACTGTGATTAAAAAGTAA60
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933
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001136
- symbol: ArcC
- description: carbamate kinase
- length: 310
- theoretical pI: 4.84797
- theoretical MW: 33612.1
- GRAVY: -0.165806
⊟Function[edit | edit source]
- reaction: EC 2.7.2.2? ExPASyCarbamate kinase ATP + NH3 + CO2 = ADP + carbamoyl phosphate
- TIGRFAM: Energy metabolism Amino acids and amines carbamate kinase (TIGR00746; EC 2.7.2.2; HMM-score: 384)and 5 moreAmino acid biosynthesis Glutamate family acetylglutamate kinase (TIGR00761; EC 2.7.2.8; HMM-score: 34.4)Amino acid biosynthesis Glutamate family glutamate 5-kinase (TIGR01027; EC 2.7.2.11; HMM-score: 20.8)Amino acid biosynthesis Glutamate family delta l-pyrroline-5-carboxylate synthetase (TIGR01092; HMM-score: 16.4)Purines, pyrimidines, nucleosides, and nucleotides Nucleotide and nucleoside interconversions putative uridylate kinase (TIGR02076; EC 2.7.4.-; HMM-score: 14.5)cyanobactin biosynthesis protein, PatB/AcyB/McaB family (TIGR04220; HMM-score: 11.5)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: no clan defined AA_kinase; Amino acid kinase family (PF00696; HMM-score: 92.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9655
- Cytoplasmic Membrane Score: 0.0055
- Cell wall & surface Score: 0.0009
- Extracellular Score: 0.0282
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.029915
- TAT(Tat/SPI): 0.000711
- LIPO(Sec/SPII): 0.003193
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MAKIVVALGGNALGKSPQEQLELVKNTSKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : argF > arcC > JSNZ_001137
⊟Regulation[edit | edit source]
- regulator: CcpA regulon
CcpA (TF) important in Carbon catabolism; regulation predicted or transferred from N315 and NCTC 8325 in Wolfgramm et al. (https://doi.org/10.1101/2025.09.03.674026)
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)