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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001002
  • pan locus tag?: SAUPAN003240000
  • symbol: JSNZ_001002
  • pan gene symbol?: —
  • synonym:
  • product: TM2 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001002
  • symbol: JSNZ_001002
  • product: TM2 domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1004781..1004996
  • length: 216
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGAAAGTCAATAAAGCCATTTATGTTATTGTTGCATTATTTCTTGGAGGTTTAGGTATT
    CATAAATTTTATGCTGATAAATTTGGACAAGGTCTTTTTCACTTATTATTTTTCTGGACA
    GGTATCCCTACCATCATCTCAATAATACATGCCATTTTTGTCATTTTTACTAAAAAAGCA
    GATAAAGATGGTTATATTATATTCCCTAAAAATTAA
    60
    120
    180
    216

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001002
  • symbol: JSNZ_001002
  • description: TM2 domain-containing protein
  • length: 71
  • theoretical pI: 10.3505
  • theoretical MW: 8060.67
  • GRAVY: 0.76338

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein modification and repair cytochrome oxidase maturation protein, cbb3-type (TIGR00847; HMM-score: 5.2)
    Metabolism Energy metabolism Electron transport cytochrome oxidase maturation protein, cbb3-type (TIGR00847; HMM-score: 5.2)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined TM2; TM2 domain (PF05154; HMM-score: 61.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0004
    • Cytoplasmic Membrane Score: 0.9615
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.038
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018335
    • TAT(Tat/SPI): 0.000243
    • LIPO(Sec/SPII): 0.068651
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKVNKAIYVIVALFLGGLGIHKFYADKFGQGLFHLLFFWTGIPTIISIIHAIFVIFTKKADKDGYIIFPKN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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