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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000972
- pan locus tag?: SAUPAN003187000
- symbol: JSNZ_000972
- pan gene symbol?: —
- synonym:
- product: alanine/glycine:cation symporter family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000972
- symbol: JSNZ_000972
- product: alanine/glycine:cation symporter family protein
- replicon: chromosome
- strand: +
- coordinates: 978155..979723
- length: 1569
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1561ATGATTGAAAAATTAGTAACCTTTTTAAATGAGGTTGTTTGGAGTAAGCCATTAGTTTAT
GGTTTGCTAATTACTGGTGTGCTATTTACATTGCGTATGCGATTTTTTCAAGTTAGACAT
TTTAAAGAAATGATTCGATTAATGTTTCAAGGAGAGAAGTCTCCTAATGGTATTTCAAGT
TTTCAAGCGATAGCCATGTCTTTAGCAGGCAGGGTTGGTACAGGTAATATTGTCGGTGTA
TCTACTGCAATATTTATAGGAGGACCTGGTGCAGTATTTTGGATGTGGATTACTGCGTTT
TTAGGTGCAAGTAGTGCTTTTATTGAATCTACACTTGGTCAAATATTCAAGAGAGTTGAA
AATAATGAATACCGTGGTGGACCAGCGTATTATATTGAATATGGTATTGGTGGTAAATTT
GGTAAAATTTACGGAATTATCTTTGCTATTGTTACGATTATCTCAGTAGGTCTATTGCTT
CCTGGTGTGCAATCTAACGCTATAGCAAGTTCTATGCAAAATGCGATTCATGTTCCACAA
TGGTTAATGGGTGCTATTGTTGTAGTTATTTTGGGATTAATTATTTTTGGTGGTGTACGT
AGTATTGCCAATGTTGCAACAGCCGTTGTACCATTTATGGCAATTATTTACATACTGATG
GCTGTCATTATCATTTGTATCAATATACAAGAAGTGCCAGCGTTATTTGCATTAATTTTC
AAATCAGCATTTGGATTACAATCTGCTTTTGGTGGTATCGTTGGCGCAATGATAGAGATT
GGTGTTAAACGTGGATTATACTCAAATGAGGCTGGTCAAGGTACAGGTCCACACGCAGCA
GCGGCAGCAGAAGTATCACATCCAAGTAAACAAGGTCTAGTACAAGCATTTTCAGTTTAT
ATTGATACATTATTTGTATGTACTGCAACTGCTCTGATTATACTTATTTCTGGTACATAT
AATGTGACTGATGGTACGGTTAATGCGAATGGCACACCGCATTTAATTAAAGATGGCGGT
ATTTATGTTGAAAATGCAACAGGTAAAGATTATTCAGGTACTGCGATGTATGCACAAGCC
GGCATTGATAAAGCGTTCCATGGCAGTGGTTATCAATTTGATCCTACTTTCTCTGGCGTA
GGTTCGTACTTTATTGCATTTGCTTTATTCTTCTTTGCATTTACTACAATTTTGTCGTAC
TACTACATTACAGAAACAAATGTTGCTTATTTAACGCGTAATCAAAATAATCAAGTTTCA
TCGATATTTATTAATATTGCTCGTGTGATTATTTTGTTCGCTACATTTTACGGTGCAGTT
AAAACAGCTGATGTAGCATGGGCATTCGGTGATTTAGGTGTAGGTCTAATGGCTTGGTTA
AATATCATTGCGATTTGGATTTTACATAAGCCTGCCGTAAATGCTTTAAAAGATTATGAA
ATTCAAAAGAAACGTTTAGGAAACGGTTATAATGCAGTTTATCAACCTGATCCGAATAAA
TTACCTAATGCTGTCTTTTGGTTGAAGACATATCCAGAACGTTTAAAACAAGCACGTGCC
AAAAAGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000972
- symbol: JSNZ_000972
- description: alanine/glycine:cation symporter family protein
- length: 522
- theoretical pI: 9.67675
- theoretical MW: 56636.8
- GRAVY: 0.531418
⊟Function[edit | edit source]
- TIGRFAM: amino acid carrier protein (TIGR00835; HMM-score: 468.8)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: APC (CL0062) Na_Ala_symp; Sodium:alanine symporter family (PF01235; HMM-score: 503.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 9
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9999
- Cell wall & surface Score: 0
- Extracellular Score: 0.0001
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002517
- TAT(Tat/SPI): 0.000279
- LIPO(Sec/SPII): 0.001251
- predicted transmembrane helices (TMHMM): 10
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MIEKLVTFLNEVVWSKPLVYGLLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISSFQAIAMSLAGRVGTGNIVGVSTAIFIGGPGAVFWMWITAFLGASSAFIESTLGQIFKRVENNEYRGGPAYYIEYGIGGKFGKIYGIIFAIVTIISVGLLLPGVQSNAIASSMQNAIHVPQWLMGAIVVVILGLIIFGGVRSIANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIFKSAFGLQSAFGGIVGAMIEIGVKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVYIDTLFVCTATALIILISGTYNVTDGTVNANGTPHLIKDGGIYVENATGKDYSGTAMYAQAGIDKAFHGSGYQFDPTFSGVGSYFIAFALFFFAFTTILSYYYITETNVAYLTRNQNNQVSSIFINIARVIILFATFYGAVKTADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYEIQKKRLGNGYNAVYQPDPNKLPNAVFWLKTYPERLKQARAKK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Hannes Wolfgramm, Larissa Milena Busch, Jöran Tebben, Henry Mehlan, Lisa Hagenau, Thomas Sura, Tilly Hoffmüller, Elisa Bludau, Manuela Gesell Salazar, Alexander Reder, Stephan Michalik, Leif Steil, Kristin Surmann, Ulrike Mäder, Silva Holtfreter, Uwe Völker
Integrated genomic and proteomic analysis of the mouse-adapted Staphylococcus aureus strain JSNZ.
Curr Res Microb Sci: 2025, 9;100489
[PubMed:41146725] [WorldCat.org] [DOI] (I e)