From AureoWiki
Jump to navigation Jump to search

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000488
  • pan locus tag?: SAUPAN002299000
  • symbol: JSNZ_000488
  • pan gene symbol?: mrnC
  • synonym:
  • product: Mini-ribonuclease 3

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000488
  • symbol: JSNZ_000488
  • product: Mini-ribonuclease 3
  • replicon: chromosome
  • strand: +
  • coordinates: 520570..520974
  • length: 405
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    GTGGATAATCAACAAGATAATCACATTAAATTATTGAATCCATTGACCTTAGCATATATG
    GGAGACGCAGTCTTAGATCAATATGTACGTACCTATATCGTTTTAAAGCTTAAAAGTAAG
    CCTAATAAACTACATCAAATGTCTAAAAAATATGTATCTGCCAAAAGTCAGGCGCAAACG
    TTAGAATATTTAATGGAGCAAGAATGGTTTACAGACGAAGAAATGAATATTTTGAAGCGA
    GGGCGTAACGCGAAAAGTCATACTAAAGCTAAAAACACTGATGTTCAAACATATCGTAAA
    AGTTCAGCGATAGAAGCAGTGATAGGTTTTCTTTATTTAGAAAAAAGAGAAGAACGATTA
    GAGGCATTATTAAATAAAATAATAACAATAGTAAACGAAAGGTAG
    60
    120
    180
    240
    300
    360
    405

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000488
  • symbol: JSNZ_000488
  • description: Mini-ribonuclease 3
  • length: 134
  • theoretical pI: 9.85086
  • theoretical MW: 15720
  • GRAVY: -0.647015

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    RNase_III (CL0539) Ribonuclease_3; Ribonuclease III domain (PF00636; HMM-score: 88.9)
    and 4 more
    Ribonucleas_3_3; Ribonuclease-III-like (PF14622; HMM-score: 22.5)
    Phage-coat (CL0373) Major_capside; Major capsid protein (PF09950; HMM-score: 16.2)
    no clan defined DUF6712; Family of unknown function (DUF6712) (PF20459; HMM-score: 15.3)
    DUF7206; Family of unknown function (DUF7206) (PF23836; HMM-score: 13.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9953
    • Cytoplasmic Membrane Score: 0.0007
    • Cell wall & surface Score: 0.0018
    • Extracellular Score: 0.0022
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004242
    • TAT(Tat/SPI): 0.000198
    • LIPO(Sec/SPII): 0.000671
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MDNQQDNHIKLLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTDEEMNILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNKIITIVNER

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=JSNZ_000488&oldid=106129"