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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000275
  • pan locus tag?: SAUPAN001851000
  • symbol: JSNZ_000275
  • pan gene symbol?: —
  • synonym:
  • product: alpha/beta hydrolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000275
  • symbol: JSNZ_000275
  • product: alpha/beta hydrolase
  • replicon: chromosome
  • strand: -
  • coordinates: 312610..313437
  • length: 828
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    GTGACTGAAATTAAAGATAAAGTAATTACTAAAGATGCATTTGCATTACCTTACACAATT
    ATTAAAGCAAAAAATCAACCAACAAAAGGCGCTATTGTCTACATCCACGGTGGTGGATTA
    ATGTTCGGTAAAGCTAACGATTTATCCCCACAGTATATCGATATCCTTACGGAACATTAC
    GATTTAATTCAACTAAGTTATCGTTTATTACCAGAAGTAAGTCTCGATTGCATTATTGAG
    GATGTCTACGCATCATTCGATGCGATTCAATCACAATATTCTAATTGCCCTATTTTTACC
    TTTGGCAGATCATCAGGTGCATATTTAAGTCTATTAATTGCACGAGACAGAGATATTGAT
    GGTGTTATTGATTTTTATGGTTATAGTCGCATCAACACTGAACCTTTTAAAACAACTAAT
    AGTTATTACGCAAAAATAGCTCAAAGCGTAAACGAAACAATGATTGCACAACTCACTTCA
    CCAACACCGGTTGTTCAAGATCAAATCGCACAACGTTTTTTAATCTACGTTTATGCACGT
    GGCACAGGTAAATGGATAAATATGATTAACATTGCTGATTATACTGATTCAAAATATAAT
    ATTGCACCAGATGAACTTAAAACACTTCCACCTGTTTTCATTGCGCATTGTAATGGCGAT
    TATGATGTTCCCGTTGAGGAAAGCGAACATATCATGAATCATGTTCCACATTCAACATTT
    GAACGCGTGAATAAAAACGAGCATGATTTTGATCGTAGACCTAATGACGAAGCAATCACT
    ATTTATCGTAAAGTTGTTGATTTCTTAAACGCTATAACAATGATGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    828

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000275
  • symbol: JSNZ_000275
  • description: alpha/beta hydrolase
  • length: 275
  • theoretical pI: 4.98514
  • theoretical MW: 31323.4
  • GRAVY: -0.210909

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    AB_hydrolase (CL0028) BD-FAE; BD-FAE (PF20434; HMM-score: 45.8)
    Abhydrolase_3; alpha/beta hydrolase fold (PF07859; HMM-score: 38.3)
    and 3 more
    Hydrolase_4; Serine aminopeptidase, S33 (PF12146; HMM-score: 22)
    COesterase; Carboxylesterase family (PF00135; HMM-score: 13)
    Peptidase_S9; Prolyl oligopeptidase family (PF00326; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8563
    • Cytoplasmic Membrane Score: 0.0153
    • Cell wall & surface Score: 0.0034
    • Extracellular Score: 0.1251
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00824
    • TAT(Tat/SPI): 0.000383
    • LIPO(Sec/SPII): 0.001752
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTEIKDKVITKDAFALPYTIIKAKNQPTKGAIVYIHGGGLMFGKANDLSPQYIDILTEHYDLIQLSYRLLPEVSLDCIIEDVYASFDAIQSQYSNCPIFTFGRSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPFKTTNSYYAKIAQSVNETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLPPVFIAHCNGDYDVPVEESEHIMNHVPHSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITMM

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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