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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS00645 [old locus tag: SA0097 ]
  • pan locus tag?: SAUPAN000891000
  • symbol: SA_RS00645
  • pan gene symbol?: —
  • synonym:
  • product: AraC family transcriptional regulator

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS00645 [old locus tag: SA0097 ]
  • symbol: SA_RS00645
  • product: AraC family transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: 108085..110283
  • length: 2199
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (108085..110283) NCBI
  • BioCyc: SA_RS00645 BioCyc
  • MicrobesOnline: see SA0097

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
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    481
    541
    601
    661
    721
    781
    841
    901
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    1021
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    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
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    2041
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    2161
    ATGCCAGATTTCAAAAGGCTCAATGGTTTAATGATTGGTTTTGTTATTAAAGGTGAGGCA
    CATATTTATGATGAAAATAACATGACGCAATGCAACAGTGGCGACATTTTCATCATTAAC
    CACCGTGACTTGTATCGATTTCAACTTCAACAAGATGGCATCATATGTTATATCCAATTC
    CAAATGAAATATTTGGCAGACAAGTTTGATGATGCGCATTGTCTATATTTTCACTTAACA
    GATGCGACCACAACCAAGAATATACATCAACTGAGAAATATAATGGCAAGACTGGTTTCA
    ACACACATTCGACATAATGAGTTGTCTAAATTGACTGAGCAACAACTTGTGATTCAGTTG
    CTTATGCATATGATTCATTATGTCCCGCGTACATATCATTCGAACCAAAGTATCTTAAAT
    GATGATAAAGTGAATCAAGTATGCGACTATATCGAGTTACATTTTCATGAAGATTTAAGC
    CTTTCAGAATTAAGCGAATACGTTGGGTGGTCAGAGAGCCATCTGTCTAAAAAGTTTACA
    GAATCGCTAGGTGTAGGATTCCAACATTTCTTAAATACGACGCGAATTGAGCATGCGAAA
    CTCGATTTAACATACACAGATGAAACGATTACTGATATTGCATTGCAAAATGGCTTTTCA
    AGTGCAGCGAGCTTTGCGAGAACATTTAAACACTTTACGCATCAAACGCCTAAACAATAT
    CGAGGTGATCGTCCAGCAATCACTGAAAATCAACAATCGGCACAACATAATTATCACGAC
    CGTGAATTGATATTACTTTTAAATGACTACATTGAAGAAATGAATCATTTCATTGAAGAT
    ATTGAAAAGATGAACTATAAAGAGATTGCCTTTAAACCAACTAATCAACAACTAAATCAA
    TTTAATCATATTATTCAAGTGGGCTATTTGAGGAATTTGCTCAATACACAGTATCAATCA
    CAGTTGCTTACATGTCATCATGATTTTCAAGTCAATGAAGTATTAGCATATGATGTGATG
    CCATATATTATGAAAAAGCTCAATGCGCCATTCACGTATGATGCAGAGATTTCGAATATA
    TTTTATGATATCGATTTGTGTTTAGACTTTTTATTAGATCATAACTTTAGTCTAACCATG
    CATTTGAATCAGTATGACTCACGAGATTATATCGATGCATTCAAAGTATTTATCCATCAC
    GTTGCCCTGCATGTCAGTCATAGAAAAGATTTGAAGTTCAACTTGTATGTGACGACATTG
    CACACGTCTTTAATTGAAATGATTGATTATTTTAAAGCATTATTCCCTAATGGTGGCTTG
    TACATTCACTTAGATCAAGCTACGGAAAGACATCTACCATTGTTGAAACGACTTGAGCCA
    CACATCAACCATTTTGTATTTGATGCCAATTCAAATGATGCTGTTGATTTTAATAAAATG
    AATGATGATGAATTTAAAACCGCGAGTCAAATGATTATTAATAAAACGAATTACCTTATC
    GACTTAATGCATCGCCATAACCTAAAGCGTCCACTCATTTTACTCAATTGGAATACATTG
    ACGGGTGATACATTTATTACAAACGGCGAATATTTTAGAGGTGGTATCATCATTGAGCAA
    TTATTAAAATTAAGTACTAAAGTAGAGGGTATCGGGTATTGGTTGAATTATGATTTGCAC
    GTCAGTCATTGTAGAAATGAACGGGATTATATGAATTCTATTGAACTGTTTCATCAATAT
    AATGGAAAACGTCCGGTCTATTTCACGGCATTGCTATTTAATAAATTAACAAGCAATATT
    TTGTATTCTGATGATACATGTATTGTCACGGGAACTGATTCAAATTTTCAAATATTGTTA
    TATGATGCAAAGCATTTTAATCCGTACTTAGCGTTGGACAATCAAATGAATATGCGTGCA
    ACGGAAATGATCCATTTGAACATTAATGCCCTAGAAGACGGTATGTATAAGATTAAACAT
    TTTACCTTAGATAAAGAAAATGGTGCGTTATTTAATCTTTGGCGCAAACATCATACGATA
    CATGGCATGGACAAGGACTCTATAGATTACGTTAATCGAATGAGTTTTCCGAAATTAGAA
    GTATATGATATAGATATCACGGACACACTGGCATTAAACATTAAAATGATTACGAATGGG
    ATTCACTTAATTGAAGTAAAACGTTACCCAAGTTCATAA
    60
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    2160
    2199

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS00645 [old locus tag: SA0097 ]
  • symbol: SA_RS00645
  • description: AraC family transcriptional regulator
  • length: 732
  • theoretical pI: 6.46994
  • theoretical MW: 86255.5
  • GRAVY: -0.363115

⊟Function[edit | edit source]

  • TIGRFAM:
    YSIRK-targeted surface antigen transcriptional regulator (TIGR04094; HMM-score: 60.2)
    and 1 more
    4-hydroxyphenylacetate catabolism regulatory protein HpaA (TIGR02297; HMM-score: 45.2)
  • TheSEED: see SA0097
  • PFAM:
    HTH (CL0123) HTH_18; Helix-turn-helix domain (PF12833; HMM-score: 77.1)
    and 2 more
    HTH_AraC; Bacterial regulatory helix-turn-helix proteins, AraC family (PF00165; HMM-score: 39.2)
    Cupin (CL0029) AraC_binding; AraC-like ligand binding domain (PF02311; HMM-score: 15.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016013
    • TAT(Tat/SPI): 0.000552
    • LIPO(Sec/SPII): 0.011716
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPDFKRLNGLMIGFVIKGEAHIYDENNMTQCNSGDIFIINHRDLYRFQLQQDGIICYIQFQMKYLADKFDDAHCLYFHLTDATTTKNIHQLRNIMARLVSTHIRHNELSKLTEQQLVIQLLMHMIHYVPRTYHSNQSILNDDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPKQYRGDRPAITENQQSAQHNYHDRELILLLNDYIEEMNHFIEDIEKMNYKEIAFKPTNQQLNQFNHIIQVGYLRNLLNTQYQSQLLTCHHDFQVNEVLAYDVMPYIMKKLNAPFTYDAEISNIFYDIDLCLDFLLDHNFSLTMHLNQYDSRDYIDAFKVFIHHVALHVSHRKDLKFNLYVTTLHTSLIEMIDYFKALFPNGGLYIHLDQATERHLPLLKRLEPHINHFVFDANSNDAVDFNKMNDDEFKTASQMIINKTNYLIDLMHRHNLKRPLILLNWNTLTGDTFITNGEYFRGGIIIEQLLKLSTKVEGIGYWLNYDLHVSHCRNERDYMNSIELFHQYNGKRPVYFTALLFNKLTSNILYSDDTCIVTGTDSNFQILLYDAKHFNPYLALDNQMNMRATEMIHLNINALEDGMYKIKHFTLDKENGALFNLWRKHHTIHGMDKDSIDYVNRMSFPKLEVYDIDITDTLALNIKMITNGIHLIEVKRYPSS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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