PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002057000
• symbol^?: —
• synonym:
• description^?: transposase

  descriptions from strain specific annotations:

  • transposase
  • IS3 family transposase
  • pseudogene
  • transposase domain-containing protein
  • transposase IS3/IS911 family protein
• strand^?: -
• coordinates^?: 2539972..2540835
• synteny block^?: BlockID0013790
• occurrence^?: in 67% of 33 strains

⊟Orthologs

COL:
SACOL0464
N315:
SA0379
NCTC8325:
SAOUHSC_00378
Newman:
NWMN_0384 (tnp)
USA300_FPR3757:
—
04-02981:
SA2981_0392
08BA02176:
C248_0467
11819-97:
—
6850:
—
71193:
ST398NM01_0486
ECT-R 2:
ECTR2_353
ED133:
—
ED98:
SAAV_0361
HO 5096 0412:
—
JH1:
SaurJH1_0452
JH9:
SaurJH9_0441
JKD6008:
SAA6008_00418
JKD6159:
SAA6159_00368
LGA251:
SARLGA251_03540
M013:
—
MRSA252:
SAR0416
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0415
Mu50:
SAV0418
MW2:
—
RF122:
—
ST398:
SAPIG0486
T0131:
SAT0131_00453
TCH60:
—
TW20:
SATW20_04910
USA300_TCH1516:
USA300HOU_0417
VC40:
SAVC_01720

⊟Genome Viewer

COL
N315
NCTC8325
Newman

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             --------MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGP
  N315            MKKVVNLIMTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGP
  NCTC8325        --------MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGP
  Newman          --------MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGP
                          ****************************************************
  
  COL             FNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
  N315            FNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
  NCTC8325        FNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
  Newman          FNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
                  **************************************