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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13110 [old locus tag: SACOL2502 ]
  • pan locus tag?: SAUPAN006092000
  • symbol: SACOL_RS13110
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS13110 [old locus tag: SACOL2502 ]
  • symbol: SACOL_RS13110
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2556603..2556869
  • length: 267
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (2556603..2556869) NCBI
  • BioCyc: SACOL_RS13110 BioCyc
  • MicrobesOnline: see SACOL2502

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGAAAGGCTCTAAACAAATACTTTTGATTATGGGCATTATATCTCTTATTGTTTTATTT
    ATTTTTACACTATTCATCATGGCGCAATATGCAAAACATTATGAACAAAAATCCGACAGT
    TCCAACGCACATACTTTAAATTCATCATCAGCCATAATTGAGCAACATACTATGTCGAAT
    TTAGCGTCTCTAGATTTATACGCTCCTGTTCGTAACATTACTTCTAGTCGTGATATTCAT
    CCCATTTATTTCATGACAAAAGATTAA
    60
    120
    180
    240
    267

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS13110 [old locus tag: SACOL2502 ]
  • symbol: SACOL_RS13110
  • description: hypothetical protein
  • length: 88
  • theoretical pI: 8.94062
  • theoretical MW: 9964.55
  • GRAVY: 0.176136

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL2502
  • PFAM:
    Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 17.2)
    no clan defined SelK_SelG; Selenoprotein SelK_SelG (PF10961; HMM-score: 15.8)
    and 2 more
    Sigma_reg_N; Sigma factor regulator N-terminal (PF13800; HMM-score: 13.5)
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain (PF14575; HMM-score: 13.1)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.170297
    • TAT(Tat/SPI): 0.002748
    • LIPO(Sec/SPII): 0.027568
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKGSKQILLIMGIISLIVLFIFTLFIMAQYAKHYEQKSDSSNAHTLNSSSAIIEQHTMSNLASLDLYAPVRNITSSRDIHPIYFMTKD

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]