From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07505 [old locus tag: SACOL1471 ]
  • pan locus tag?: SAUPAN003871000
  • symbol: SACOL_RS07505
  • pan gene symbol?: rnhA
  • synonym:
  • product: ribonuclease H

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS07505 [old locus tag: SACOL1471 ]
  • symbol: SACOL_RS07505
  • product: ribonuclease H
  • replicon: chromosome
  • strand: +
  • coordinates: 1479407..1479808
  • length: 402
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (1479407..1479808) NCBI
  • BioCyc: SACOL_RS07505 BioCyc
  • MicrobesOnline: see SACOL1471

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGGCGAAAATAAATTTTGATGCTGCGACGAAAGGAAATCCAGGCATAAGTACATGTGCC
    ATTGTAATCAAAGAAGATGAGCAGCATTATACATATACACATGAGTTAGGCGAAATGGAT
    AACCACACTGCAGAATGGGCTGCATGTATTTATGCACTAGAACATGCACGTGAATTAAAT
    GTTCAAAACGCACTATTATATACAGACTCAAAGCTAATTGCAGATAGCATTGAAGCTGGT
    TATGTGAAAAACGCAAATTTCAAACCTTATTTTGATCAAATAGAAATATTTGAAAAAGAT
    TTTGATTTATTATTTGTTAAATGGATACCGAGAGAACAAAACAAAGAAGCGAATCAACAC
    GCTCAACAGGCATTGTATAAATTAATTAAAAAGAATAAATAA
    60
    120
    180
    240
    300
    360
    402

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS07505 [old locus tag: SACOL1471 ]
  • symbol: SACOL_RS07505
  • description: ribonuclease H
  • length: 133
  • theoretical pI: 5.58782
  • theoretical MW: 15354.2
  • GRAVY: -0.529323

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL1471
  • PFAM:
    RNase_H (CL0219) RVT_3; Reverse transcriptase-like (PF13456; HMM-score: 61)
    and 1 more
    RNase_H; RNase H (PF00075; HMM-score: 31.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 9.2
    • Extracellular Score: 0.78
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007292
    • TAT(Tat/SPI): 0.000152
    • LIPO(Sec/SPII): 0.004787
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MAKINFDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALEHARELNVQNALLYTDSKLIADSIEAGYVKNANFKPYFDQIEIFEKDFDLLFVKWIPREQNKEANQHAQQALYKLIKKNK

Experimental data[edit | edit source]

  • experimentally validated: see SACOL1471
  • protein localization: see SACOL1471
  • quantitative data / protein copy number per cell: see SACOL1471
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]