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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 03-AUG-2016

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_00614
  • pan locus tag?: SAUPAN002477000
  • symbol: SAOUHSC_00614
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_00614
  • symbol: SAOUHSC_00614
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 606065..607015
  • length: 951
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Gene ID: 3918933 NCBI
  • RefSeq: YP_499177 NCBI
  • BioCyc: G1I0R-574 BioCyc
  • MicrobesOnline: 1289087 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACATTTAATAAAGTATTATTGAGCTGGATAGTCATATTGATTATAACAACTAGCATA
    TATCTATTTTGGCAGTTGGGCGATATCAATGATGTATTTAACCAGTCTATTTTAATCAAT
    GTTAGATTACCGAGATTATTAGAAGCATTGTTGACAGGTATGATATTAACTGTTGCAGGC
    CTTATATTTCAAACAGTTTTAAATAATGCATTGGCAGATAGCTTTACATTAGGATTGGCA
    AGCGGCGCTACATTTGGTTCAGGATTAGCATTATTTTTAGGTTTAACAACGTTATGGATT
    CCTGTATTTTCAATAACATTTAGTTTGATAACATTAATAACTGTATTAGTCATTACGTCG
    GTATTGAGCCAAGGCTATCCAGTTAGAATCTTAATATTAAGTGGTTTAATGATTGGTGCG
    TTATTCAATTCACTTCTATATTTTTTGATTTTATTAAAACCTCGCAAATTAAATACAATT
    GCCAATTATCTGTTTGGTGGTTTTGGTGATGCAGAATACTCAAATGTATCTATAATAGCA
    ATCACATTTATCATTGCATTGTTTGGTATATTTATCATTCTTAATCAACTAAAGTTATTG
    CAATTAGGAGAACTAAAAAGTCAGTCACTAGGCTTAAATGTTCAATTGATTACATATATC
    GCGTTATGTATAGCTTCTATGATAACGGCGATAAATGTCGCATATGTTGGCATCATTGGA
    TTCATTGGTATGGTGATACCGCAACTCATTAGAAAATGGCAGTGGAAACAATCATTAGGA
    AGACAATTGGCTTTAAATATTGTAACTGGAGGACAAATAATGGTTATGGCAGATTTTATT
    GGTAGCCATATATTGTCACCAGTACAAATACCGGCAAGTATTATCATTGCATTAATTGGT
    ATACCAGTGTTATTTTACATGCTAATATCTCAGTCGAAACGGTTACACTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    951

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_00614
  • symbol: SAOUHSC_00614
  • description: hypothetical protein
  • length: 316
  • theoretical pI: 10.0583
  • theoretical MW: 34604.6
  • GRAVY: 1.13924

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 121.6)
    and 1 more
    Genetic information processing Protein fate Protein and peptide secretion and trafficking protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic (TIGR00327; HMM-score: 8)
  • TheSEED  :
    • Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1)
    Stress Response Stress Response - no subcategory Flavohaemoglobin  Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1)
  • ⊞PFAM:
    Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 212.3)
    and 2 more
    ABC-3; ABC 3 transport family (PF00950; HMM-score: 22.8)
    P-loop_NTPase (CL0023) AAA_32; LonB-like, AAA domain (PF13654; HMM-score: 14.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0003
    • Cytoplasmic Membrane Score: 0.9991
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0006
  • ⊞LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005658
    • TAT(Tat/SPI): 0.000105
    • LIPO(Sec/SPII): 0.007409
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

  • GI: 88194384 NCBI
  • RefSeq: YP_499177 NCBI
  • UniProt: Q2G0F5 UniProt
  • STRING: 93061.SAOUHSC_00614 STRING

⊟Protein sequence[edit | edit source]

  • MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: SAOUHSC_00613 > SAOUHSC_00614 > SAOUHSC_00615 > SAOUHSC_00616 > SAOUHSC_00617 > SAOUHSC_00618 > SAOUHSC_00619
    predicted SigA promoter [1] : SAOUHSC_00614 > SAOUHSC_00615 > SAOUHSC_00616

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser:  [1] 
    Expression Data Browser
    ⊟Multi-gene expression profiles



    Click on any data point to display a description of the corresponding condition!

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: no data available

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Jump up to: 1.0 1.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAOUHSC_00614&oldid=73735"
  • This page was last edited on 10 March 2016, at 22:27.
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