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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS09165 [old locus tag: SA1628 ]
  • pan locus tag?: SAUPAN004559000
  • symbol: SA_RS09165
  • pan gene symbol?: splD
  • synonym:
  • product: serine protease SplD

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS09165 [old locus tag: SA1628 ]
  • symbol: SA_RS09165
  • product: serine protease SplD
  • replicon: chromosome
  • strand: -
  • coordinates: 1861946..1862665
  • length: 720
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1861946..1862665) NCBI
  • BioCyc: SA_RS09165 BioCyc
  • MicrobesOnline: see SA1628

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGAATAAAAATATAATCATCAAAAGTATTGCGGCATTGACGATTTTAACATCAATAACT
    GGTGTCGGCACAACAGTGGTTGATGGTATTCAACAAACAGCCAAAGCAGAAAATAGTGTG
    AAATTAATTACCAACACGAATGTTGCACCATACAGTGGTGTTACATGGATGGGCGCTGGA
    ACAGGATTTGTAGTTGGGAATCATACAATCATTACCAATAAACATGTTACTTATCACATG
    AAAGTCGGTGATGAAATCAAAGCACATCCTAATGGTTTTTATAATAACGGTGGTGGACTT
    TATAAAGTTACTAAGATTGTAGATTATCCTGGTAAAGAAGATATTGCGGTTGTACAAGTT
    GAAGAAAAATCAACGCAACCAAAAGGTAGAAAATTCAAAGATTTCACTAGCAAATTTAAT
    ATAGCATCAGAAGCTAAAGAAAATGAACCTATATCAGTCATTGGTTATCCAAATCCTAAT
    GGAAATAAACTACAAATGTATGAATCAACTGGTAAAGTACTATCAGTGAATGGAAATATA
    GTGACATCTGATGCGGTTGTCCAACCTGGCAGCTCTGGTTCACCTATATTAAATAGTAAG
    CGAGAAGCAATTGGTGTTATGTATGCTAGTGATAAACCAACAGGTGAAAGTACAAGGTCA
    TTTGCTGTTTATTTCTCTCCTGAAATTAAGAAATTTATTGCAGATAATTTAGATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720

⊟Protein[edit | edit source]

Protein Data Bank: 4INK

⊟General[edit | edit source]

  • locus tag: SA_RS09165 [old locus tag: SA1628 ]
  • symbol: SA_RS09165
  • description: serine protease SplD
  • length: 239
  • theoretical pI: 9.67665
  • theoretical MW: 25678
  • GRAVY: -0.272803

⊟Function[edit | edit source]

  • reaction:
    EC 3.4.21.-?  ExPASy
  • ⊞TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides peptidase Do (TIGR02037; EC 3.4.21.-; HMM-score: 26.6)
    Genetic information processing Protein fate Protein folding and stabilization peptidase Do (TIGR02037; EC 3.4.21.-; HMM-score: 26.6)
    and 1 more
    Genetic information processing Transcription Degradation of RNA inner membrane protein YhjD (TIGR00766; HMM-score: 10.7)
  • TheSEED: see SA1628
  • ⊞PFAM:
    Peptidase_PA (CL0124) Trypsin_2; Trypsin-like peptidase domain (PF13365; HMM-score: 64.8)
    Trypsin; Trypsin (PF00089; HMM-score: 56.2)
    and 4 more
    Peptidase_S7; Peptidase S7, Flavivirus NS3 serine protease (PF00949; HMM-score: 25.3)
    Mycop_pep_DUF31; Mycoplasma peptidase (DUF31) (PF01732; HMM-score: 15.6)
    Peptidase_S29; Hepatitis C virus NS3 protease (PF02907; HMM-score: 14.4)
    Peptidase_S46; Peptidase S46 (PF10459; HMM-score: 11.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.73
    • Internal Helices: 2
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0.0019
    • Extracellular Score: 0.998
  • LocateP:
  • ⊞SignalP: Signal peptide SP(Sec/SPI) length 36 aa
    • SP(Sec/SPI): 0.92206
    • TAT(Tat/SPI): 0.005592
    • LIPO(Sec/SPII): 0.024453
    • Cleavage Site: CS pos: 36-37. AKA-EN. Pr: 0.7552
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKNIIIKSIAALTILTSITGVGTTVVDGIQQTAKAENSVKLITNTNVAPYSGVTWMGAGTGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQVEEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNIVTSDAVVQPGSSGSPILNSKREAIGVMYASDKPTGESTRSFAVYFSPEIKKFIADNLDK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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