PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

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⊟Summary

• organism: Staphylococcus aureus N315
locus tag: SA0101
pan locus tag^?: SAUPAN000900000
symbol: SA0101
pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA0101
• symbol: SA0101
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 115245..115415
• length: 171
• essential: no DEG

⊟Accession numbers

• Gene ID: 1122875 NCBI
• RefSeq: NP_373342 NCBI
• BioCyc:
• MicrobesOnline: 102368 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  
  ATGATATGTTCACAAACTTTATTTCGTTATCCCACTCACATGATTTTTTTGATGAAACAT
  AATTACATGATTGATTGCATCATTTTGTTAAACAATTTATTGCAAACCTGCCATTTCACA
  CTGAAAATTTACATAATAAGTGACGATATTTTACAAGTCATATACAAATAA
  60
  120
  171
  

⊟Protein

⊟General

• locus tag: SA0101
• symbol: SA0101
• description: hypothetical protein
• length: 56
• theoretical pI: 8.06787
• theoretical MW: 6782.22
• GRAVY: 0.617857

⊟Function

• TIGRFAM:
• TheSEED:
• PFAM:

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• ⊞DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.8155
  • Cytoplasmic Membrane Score: 0.0123
  • Cell wall & surface Score: 0
  • Extracellular Score: 0.1722
• ⊞LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• ⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.010756
  • TAT(Tat/SPI): 0.000147
  • LIPO(Sec/SPII): 0.030631
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15925809 NCBI
• RefSeq: NP_373342 NCBI
• UniProt: A0A0H3JSB7 UniProt

⊟Protein sequence

• MICSQTLFRYPTHMIFLMKHNYMIDCIILLNNLLQTCHFTLKIYIISDDILQVIYK

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: SA0101 < SA0102

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications