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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2371 [new locus tag: NWMN_RS13660 ]
  • pan locus tag?: SAUPAN006038000
  • symbol: NWMN_2371
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_2371 [new locus tag: NWMN_RS13660 ]
  • symbol: NWMN_2371
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2609569..2609991
  • length: 423
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGCCGTATAATTACAAGAAACAAAATGGAGAGTTAATGTCTGTAATGAGCCAAGGTGAA
    AAGTTTATTCATCAATCACCCGTTAATGATGAACTTAGTGCATTGATTAAGTTATTAATT
    TCTAAAATTAACGGTTGTCATTATTGTGTTGATATCCATAAAAAAGAATTAAAGGAATTG
    GGTGTAACACAAATGAAAATTGATGAAGTCTTGAGTTTTAGACATTTAGATTTATTTACT
    GATCAAGAAAAAGTGACGCTTGAATTTGCAGAAATGTTAAATTCAATCAAAGACTTTAAG
    AAGTTTGAAATTATTGACCGGCTAAAATCATTTTATGATGAAGAACAAATTATTGATCTT
    GTCTTTGTTGTAAACCAAATTAACGGTTGGAACAGATTAAATATTATTAGTGATAGACTA
    TAA
    60
    120
    180
    240
    300
    360
    420
    423

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_2371 [new locus tag: NWMN_RS13660 ]
  • symbol: NWMN_2371
  • description: hypothetical protein
  • length: 140
  • theoretical pI: 5.65611
  • theoretical MW: 16484
  • GRAVY: -0.263571

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 1.11.1.15?  ExPASy
    Peroxiredoxin 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH
  • ⊞TIGRFAM:
    uncharacterized peroxidase-related enzyme (TIGR01926; HMM-score: 41.8)
    Unknown function General alkylhydroperoxidase AhpD family core domain (TIGR00778; HMM-score: 40.8)
    and 3 more
    alkylhydroperoxidase domain protein, Avi_7169 family (TIGR04030; HMM-score: 31.3)
    Cellular processes Cellular processes Detoxification alkylhydroperoxidase, AhpD family (TIGR00777; EC 1.11.1.15; HMM-score: 24.2)
    alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein (TIGR04169; HMM-score: 14.9)
  • TheSEED  :
    • AhpD-like protein
  • ⊞PFAM:
    AhpD-like (CL0423) CMD; Carboxymuconolactone decarboxylase family (PF02627; HMM-score: 41.8)
    and 1 more
    Thioredoxin (CL0172) Thioredoxin_2; Thioredoxin-like domain (PF13098; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8024
    • Cytoplasmic Membrane Score: 0.0646
    • Cell wall & surface Score: 0.0014
    • Extracellular Score: 0.1316
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008634
    • TAT(Tat/SPI): 0.00068
    • LIPO(Sec/SPII): 0.001246
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPYNYKKQNGELMSVMSQGEKFIHQSPVNDELSALIKLLISKINGCHYCVDIHKKELKELGVTQMKIDEVLSFRHLDLFTDQEKVTLEFAEMLNSIKDFKKFEIIDRLKSFYDEEQIIDLVFVVNQINGWNRLNIISDRL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • ⊞regulator: SigB (activation) regulon

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Markus Bischoff, Paul Dunman, Jan Kormanec, Daphne Macapagal, Ellen Murphy, William Mounts, Brigitte Berger-Bächi, Steven Projan
    Microarray-based analysis of the Staphylococcus aureus sigmaB regulon.
    J Bacteriol: 2004, 186(13);4085-99
    [PubMed:15205410] [WorldCat.org] [DOI] (P p)
  2. ↑ Bettina Schulthess, Dominik A Bloes, Patrice François, Myriam Girard, Jacques Schrenzel, Markus Bischoff, Brigitte Berger-Bächi
    The σB-dependent yabJ-spoVG operon is involved in the regulation of extracellular nuclease, lipase, and protease expression in Staphylococcus aureus.
    J Bacteriol: 2011, 193(18);4954-62
    [PubMed:21725011] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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