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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2391 [new locus tag: SA_RS13685 ]
  • pan locus tag?: SAUPAN006292000
  • symbol: panC
  • pan gene symbol?: panC
  • synonym:
  • product: pantoate--beta-alanine ligase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2391 [new locus tag: SA_RS13685 ]
  • symbol: panC
  • product: pantoate--beta-alanine ligase
  • replicon: chromosome
  • strand: -
  • coordinates: 2679036..2679887
  • length: 852
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGACTAAGCTGATTACTACGGTAAAAGAGATGCAACACATTGTTAAAGCAGCCAAACGC
    TCAGGAACAACGATTGGTTTTATCCCAACAATGGGTGCCTTACATGATGGACATTTAACG
    ATGGTACGCGAATCAGTTAGTACAAATGATATTACAGTTGTGAGTGTATTTGTTAATCCA
    TTACAATTTGGTCCAAACGAAGATTTCGATGCTTATCCGAGACAAATTGATAAAGATTTA
    GAATTAGTATCAGAAGTAGGGGCGGACATTGTTTTTCATCCTGCAGTAGAAGATATATAT
    CCAGGTGAATTAGGTATTGATGTCAAAGTAGGTCCATTAGCTGATGTGTTAGAAGGAGCG
    AAGCGTCCAGGGCATTTTGATGGGGTGGTAACAGTAGTTAATAAGCTATTTAATATTGTT
    ATGCCGGATTATGCTTATTTTGGTAAAAAAGATGCCCAGCAATTGGCTATTGTCGAGCAA
    ATGGTAAAAGACTTCAATCATGCCGTTGAAATTATTGGTATTGATATCGTTCGAGAAGCA
    GATGGTTTGGCGAAAAGTTCAAGAAATGTTTATTTAACGGAGCAAGAACGACAAGAAGCG
    GTACATTTAAGTAAAAGTTTGCTATTAGCACAAGCGTTGTATCAAGACGGTGAACGTCAA
    AGTAAAGTAATTATAGACAGGGTTACTGAATATCTTGAATCACATATAAGTGGACGCATT
    GAAGAAGTTGCTGTTTATAGTTATCCTCAATTAGTAGAACAACACGAAATAACTGGACGC
    ATATTTATCTCGTTAGCTGTCAAATTTTCAAAAGCGCGTTTAATAGATAATATAATAATT
    GGAGCTGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    852

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2391 [new locus tag: SA_RS13685 ]
  • symbol: PanC
  • description: pantoate--beta-alanine ligase
  • length: 283
  • theoretical pI: 4.95781
  • theoretical MW: 31429.8
  • GRAVY: -0.0127208

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 6.3.2.1?  ExPASy
    Pantoate--beta-alanine ligase (AMP-forming) ATP + (R)-pantoate + beta-alanine = AMP + diphosphate + (R)-pantothenate
  • ⊞TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pantothenate and coenzyme A pantoate--beta-alanine ligase (TIGR00018; EC 6.3.2.1; HMM-score: 344.3)
    and 1 more
    cytidyltransferase-like domain (TIGR00125; HMM-score: 27.3)
  • TheSEED  :
    • Pantoate--beta-alanine ligase (EC 6.3.2.1)
    Cofactors, Vitamins, Prosthetic Groups, Pigments Coenzyme A Coenzyme A Biosynthesis  Pantoate--beta-alanine ligase (EC 6.3.2.1)
  • ⊞PFAM:
    HUP (CL0039) Pantoate_ligase; Pantoate-beta-alanine ligase (PF02569; HMM-score: 342.6)
    and 2 more
    TPR (CL0020) Ints3_N; Integrator complex subunit 3 N-terminal (PF10189; HMM-score: 15)
    Ubiquitin (CL0072) Caps_syn_GfcC_N; Capsule biosynthesis GfcC, N-terminal (PF20616; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9994
    • Cytoplasmic Membrane Score: 0
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0006
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.013361
    • TAT(Tat/SPI): 0.001038
    • LIPO(Sec/SPII): 0.0019
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVSTNDITVVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDIYPGELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDRVTEYLESHISGRIEEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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