PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

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⊟Summary

• organism: Staphylococcus aureus N315
locus tag: SA0170 [new locus tag: SA_RS01025 ]
pan locus tag^?: SAUPAN001014000
symbol: SA0170
pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA0170 [new locus tag: SA_RS01025 ]
• symbol: SA0170
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 193562..193912
• length: 351
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1122946 NCBI
• RefSeq: NP_373413 NCBI
• BioCyc: see SA_RS01025
• MicrobesOnline: 102439 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
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  301
  
  ATAGATACGCATACTAAAGAACAACAATTCTCGAATCTAGTAAGATCTTATCGTAAAGAA
  TACGTGGGTAAAGGACCCAATAGTATTCGAGTGTCGTTTAAAGATAATTGGGCGATTGCA
  CATATGACAGGTGTTTTGAGTAAAGTTGAGAGTTTTTACCTAAACGACAAACGCAATGAA
  TCAATGCTCCATTATACACGCACAGAGAAGATTAAACAGATGTATAAAGAAATAGATGTA
  AATGAGATGGAAAGTCTTGTAGGCGCTAAGTTTGTAAAATTATTTACAGATATTGATTTG
  AATGATGATGAAGTCATTTCAATATTTGTTTTCGATAAGTCAATAGAATAA
  60
  120
  180
  240
  300
  351
  

⊟Protein

⊟General

• locus tag: SA0170 [new locus tag: SA_RS01025 ]
• symbol: SA0170
• description: hypothetical protein
• length: 116
• theoretical pI: 6.26459
• theoretical MW: 13651.4
• GRAVY: -0.552586

⊟Function

• TIGRFAM:
  conserved hypothetical protein (TIGR01741; HMM-score: 15.5)
• TheSEED  :
  • FIG01108230: hypothetical protein
• ⊞PFAM:
  no clan defined MpsC; Na+-translocating membrane potential-generating system (MpsC) (PF10057; HMM-score: 103.1)
  and 2 more
  DUF3269; Protein of unknown function (DUF3269) (PF11673; HMM-score: 14.2)
  APO_RNA-bind; APO RNA-binding (PF05634; HMM-score: 13.1)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• ⊞DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.8774
  • Cytoplasmic Membrane Score: 0.0727
  • Cell wall & surface Score: 0.0009
  • Extracellular Score: 0.0489
• ⊞LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• ⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.005351
  • TAT(Tat/SPI): 0.000523
  • LIPO(Sec/SPII): 0.000946
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15925880 NCBI
• RefSeq: NP_373413 NCBI
• UniProt: A0A0H3JSJ5 UniProt

⊟Protein sequence

• MDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell: data available for COL
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: no polycistronic organisation predicted

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications