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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2435 [new locus tag: SA_RS13960 ]
  • pan locus tag?: SAUPAN006373000
  • symbol: pmi
  • pan gene symbol?: pmi
  • synonym:
  • product: mannose-6-phosphate isomerase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2435 [new locus tag: SA_RS13960 ]
  • symbol: pmi
  • product: mannose-6-phosphate isomerase
  • replicon: chromosome
  • strand: +
  • coordinates: 2735353..2736291
  • length: 939
  • essential: yes DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGGCATTATTTTTACAACCCGTTTTTAAAGACAGAATTTGGGGCGGTCATGCATTAAAA
    GCATTTAACTATGATATCCCTAATGAAACAACTGGTGAATGCTGGGCAATTTCTGCACAT
    CCAAATGGTCCTAATACAATTATCAATGGTCCATACAAGGATATGACCCTAGATCAACTT
    TGGTCACAACATCGTGAATTATTCGATAATGATTCACGAGATAGTTTCCCTCTGCTAACT
    AAAGTATTAGATGCCAATGATAAATTATCTGTTCAAGTTCATCCAGATGATGACTACGCT
    TTAAAACACGAAGGCGAACTAGGTAAAACAGAATGTTGGTATATTTTAGATGCAGCCCCA
    GGTGCTGAAATTATATATGGCGTACATGCACATAATAAACAGACGTTAATCGACATGATT
    GATAATCATGAATTTGACAGTCTTTTCAAACGTATACCTGTTAAGCCCGGTGACTTTTAT
    TATGTTCCTGCTGGCACTGTCCATGCCATTGGTTCGGGTATTTTAATTTTAGAGACACAA
    CAATCATCCGATACGACATACCGTATTTATGACTATGATAGACGAGATCAAAATGGTCAA
    TTGCGTGATTTGCACTTAGAGCAAAGTAAAGATGTGATTGAATTAGGCAATCATGAACCA
    AATACTACTCCTATAACAACTCACATCGACACACACACTGTAACTCAATTTGTAGATAAT
    CAATATTTTGCAGTATATAAATGGGATATTCATGGAGATTTAAAATTCAATAAACCACAT
    GCTTATTGCTTAGTTACTATTATCGATGGTACTGGTACTTTAACAGTAAACGATAAGCAC
    TATGACATCCAAAAAGGTTCTAGCTTTATTTTAACTACGGAAGACGAGGATATTCACTTT
    GTCGGTAATATTAGTGCTATAGTAAGTCATCCTGGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    939

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2435 [new locus tag: SA_RS13960 ]
  • symbol: Pmi
  • description: mannose-6-phosphate isomerase
  • length: 312
  • theoretical pI: 4.94021
  • theoretical MW: 35395.2
  • GRAVY: -0.461538

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Sugars mannose-6-phosphate isomerase, class I (TIGR00218; EC 5.3.1.8; HMM-score: 226.2)
  • TheSEED  :
    • Mannose-6-phosphate isomerase (EC 5.3.1.8)
    Carbohydrates Monosaccharides Mannose Metabolism  Mannose-6-phosphate isomerase (EC 5.3.1.8)
  • ⊞PFAM:
    Cupin (CL0029) PMI_typeI_cat; Phosphomannose isomerase type I, catalytic domain (PF20511; HMM-score: 92.1)
    MPI_cupin_dom; Mannose-6-phosphate isomerase, cupin domain (PF21621; HMM-score: 80.4)
    and 4 more
    Cupin_2; Cupin domain (PF07883; HMM-score: 35.9)
    AraC_binding; AraC-like ligand binding domain (PF02311; HMM-score: 24.6)
    no clan defined YjbF; Group 4 capsule polysaccharide lipoprotein gfcB, YjbF (PF11102; HMM-score: 12.9)
    Cupin (CL0029) Cupin_3; EutQ-like cupin domain (PF05899; HMM-score: 12.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Zn2+
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9976
    • Cytoplasmic Membrane Score: 0.0005
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0019
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.050223
    • TAT(Tat/SPI): 0.002634
    • LIPO(Sec/SPII): 0.008036
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MALFLQPVFKDRIWGGHALKAFNYDIPNETTGECWAISAHPNGPNTIINGPYKDMTLDQLWSQHRELFDNDSRDSFPLLTKVLDANDKLSVQVHPDDDYALKHEGELGKTECWYILDAAPGAEIIYGVHAHNKQTLIDMIDNHEFDSLFKRIPVKPGDFYYVPAGTVHAIGSGILILETQQSSDTTYRIYDYDRRDQNGQLRDLHLEQSKDVIELGNHEPNTTPITTHIDTHTVTQFVDNQYFAVYKWDIHGDLKFNKPHAYCLVTIIDGTGTLTVNDKHYDIQKGSSFILTTEDEDIHFVGNISAIVSHPG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • ⊞regulators: ManR (activation) regulon, CcpA regulon

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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