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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS01905 [old locus tag: SA0332 ]
  • pan locus tag?: SAUPAN001883000
  • symbol: SA_RS01905
  • pan gene symbol?: fepB
  • synonym:
  • product: deferrochelatase/peroxidase EfeB

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS01905 [old locus tag: SA0332 ]
  • symbol: SA_RS01905
  • product: deferrochelatase/peroxidase EfeB
  • replicon: chromosome
  • strand: +
  • coordinates: 389815..391044
  • length: 1230
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (389815..391044) NCBI
  • BioCyc: SA_RS01905 BioCyc
  • MicrobesOnline: see SA0332

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGACAAATTATGAACAAGTTAACGATAGTACGCAATTTTCAAGACGTACATTTTTGAAA
    ATGTTAGGTATTGGCGGTGCCGGTGTTGCAATTGGCGCAAGTGGTGTTGGTAGCATGTGG
    TCTTTCAAATCAATGTTCAATACACCAGAAGATCCGGAAAAAGATGCGTATGAATTTTAT
    GGTAAAGTGCAACCAGGCATTACCACACCCACGCAAAAAACATGCAATTTCGTTGCGTTA
    GATTTGAAGTCAAAAGATAGAGATGCAATTAAGGCAATGTTTAAAAAGTGGACGGTTATG
    GCTGATCGTATGATGGATGGTGATACAGTTGGCAAGACGAGTAACAATCCTTTAATGCCA
    CCAGTAGATACCGGTGAATCGATAGGATTAGGTGCAAGCAAGTTAACGATTACCTTTGGG
    ATTAGTAAGTCTTTGATGAAGAAAATTGGGTTATCTAGTAAAATTCCCGATGCCTTTAAA
    GATTTACCGCATTTTCCGAATGATCAGTTAATAGACGATTACAGCGATGGTGATATTATG
    ATTCAAGCATGCTCAAATGATTCGCAAGTATCCTTTCATGCGGTTCATAATTTAGTTCGT
    CCATTTCGAGATATTGTTAAGGTACGTTGGGCGCAATCTGGTTTTATCTCTGCTAAAGGT
    AAGGAAACACCTAGAAATTTAATGGCATTTAAAGATGGAACAATTAATCCTAGAAAGAGT
    AATCAACTTAAAGATTATGTGTTTATTGATGACGGATGGGCGAAACATGGAACTTATTGT
    GTTGTCAGACGTATTCAAATACACATTGAAACGTGGGATCGTACTGCACTGGAAGAACAA
    GAGGCTACATTTGGTCGGAAACGACATAGTGGTGCGCCGTTAACAGGTGGGAAAGAGTTT
    GATGAAATTGACTTAAAAGCGAAAGATAGTCATGGCGAGTATATTATTGATAAAGATGCC
    CATACGAGACTAGCGAAAGAAGCAAATACGTCAATTTTACGTAGAGCCTTTAATTATGTT
    GATGGTACGGATGACCGCACAGGTAACTTCGAAACAGGCTTGTTGTTCATTGCTTTTCAA
    AAAGCGACAAAACAATTTATCGATATACAAAATAATTTAGGTAGTAATGATAAATTAAAT
    GAATATATTACACATAGAGGTTCTGCTTCATTTTTAGTATTACCAGGTGTTAGTAAGGGA
    GGATACCTTGGTGAAACATTATTTGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1230

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS01905 [old locus tag: SA0332 ]
  • symbol: SA_RS01905
  • description: deferrochelatase/peroxidase EfeB
  • length: 409
  • theoretical pI: 8.08612
  • theoretical MW: 45535.2
  • GRAVY: -0.471883

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Tat-translocated enzyme (TIGR01412; HMM-score: 598.1)
    and 3 more
    Dyp-type peroxidase family (TIGR01413; HMM-score: 330.1)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking Tat (twin-arginine translocation) pathway signal sequence (TIGR01409; HMM-score: 25.5)
    Unknown function General formate dehydrogenase region TAT target (TIGR02811; HMM-score: 13.9)
  • TheSEED: see SA0332
  • ⊞PFAM:
    Dim_A_B_barrel (CL0032) Dyp_perox_C; Dyp-type peroxidase, C-terminal (PF20628; HMM-score: 175.3)
    Dyp_perox_N; Dyp-type peroxidase, N-terminal (PF04261; HMM-score: 166)
    and 2 more
    DUF7405; Family of unknown function (DUF7405) (PF24152; HMM-score: 23.5)
    TAT (CL0300) TAT_signal; TAT (twin-arginine translocation) pathway signal sequence (PF10518; HMM-score: 20)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Extracellular
    • Cytoplasmic Score: 0.1
    • Cytoplasmic Membrane Score: 0.14
    • Cellwall Score: 0.15
    • Extracellular Score: 9.6
    • Internal Helix: 1
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0224
    • Cytoplasmic Membrane Score: 0.4633
    • Cell wall & surface Score: 0.0037
    • Extracellular Score: 0.5106
  • LocateP:
  • ⊞SignalP: Signal peptide TAT(Tat/SPI) length 41 aa
    • SP(Sec/SPI): 0.002268
    • TAT(Tat/SPI): 0.988184
    • LIPO(Sec/SPII): 0.003962
    • Cleavage Site: CS pos: 41-42. MWS-FK. Pr: 0.3841
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTNYEQVNDSTQFSRRTFLKMLGIGGAGVAIGASGVGSMWSFKSMFNTPEDPEKDAYEFYGKVQPGITTPTQKTCNFVALDLKSKDRDAIKAMFKKWTVMADRMMDGDTVGKTSNNPLMPPVDTGESIGLGASKLTITFGISKSLMKKIGLSSKIPDAFKDLPHFPNDQLIDDYSDGDIMIQACSNDSQVSFHAVHNLVRPFRDIVKVRWAQSGFISAKGKETPRNLMAFKDGTINPRKSNQLKDYVFIDDGWAKHGTYCVVRRIQIHIETWDRTALEEQEATFGRKRHSGAPLTGGKEFDEIDLKAKDSHGEYIIDKDAHTRLAKEANTSILRRAFNYVDGTDDRTGNFETGLLFIAFQKATKQFIDIQNNLGSNDKLNEYITHRGSASFLVLPGVSKGGYLGETLFD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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