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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

organism: Staphylococcus aureus N315

locus tag: SA1937 [new locus tag: SA_RS11125 ]

pan locus tag^?: SAUPAN005431000

symbol: SA1937

pan gene symbol^?: —

synonym:
product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SA1937 [new locus tag: SA_RS11125 ]
symbol: SA1937
product: hypothetical protein
replicon: chromosome
strand: -
coordinates: 2186982..2187332
length: 351
essential: no DEG other strains

⊟Accession numbers[edit | edit source]

Gene ID: 1124838 NCBI
RefSeq: NP_375242 NCBI
BioCyc: see SA_RS11125
MicrobesOnline: 104268 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
TTGAACATACTAAGATATTTATTAGGAATAGGTTTTAGTGTAATAGGTGTATTGCATTTT
ACACGAGAACGACAATTTAGAAATATCATACCGAAATGTTTGCCACTTCGAAAAACAGCG
GTTCTTGTTACAGGAATCTTTGAGATATTATTTGGACTTGCACTTTTAATTAAAAGACCA
TCTCAATGCTTGAAAAATACAATCAATCTATTCTTGCTAGCTGTATTCCCAGCTAATATC
TATATGGCAGTTAAAAAGTTACCTTTAGGAGATAAACAATTGCCAACATGGCAACTATAT
TTAAGGTTACCTATGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAG
60
120
180
240
300
351

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SA1937 [new locus tag: SA_RS11125 ]
symbol: SA1937
description: hypothetical protein
length: 116
theoretical pI: 11.2863
theoretical MW: 13339.4
GRAVY: 0.64569

⊟Function[edit | edit source]

TIGRFAM:
TheSEED :
- Hypothetical protein SAV2135
PFAM:
DoxD-like (CL0131) MauE; Methylamine utilisation protein MauE (PF07291; HMM-score: 18.4)
DoxX_3; DoxX-like family (PF13781; HMM-score: 16.6)
TSPAN_4TM-like (CL0347) Tetraspanin; Tetraspanin family (PF00335; HMM-score: 16.3)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helix: 1
⊞
DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.003
- Cytoplasmic Membrane Score: 0.9778
- Cell wall & surface Score: 0.0003
- Extracellular Score: 0.0189
⊞
LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.010688
- TAT(Tat/SPI): 0.000833
- LIPO(Sec/SPII): 0.007345
predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

GI: 15927709 NCBI
RefSeq: NP_375242 NCBI
UniProt: A0A0H3JMY5 UniProt

⊟Protein sequence[edit | edit source]

MNILRYLLGIGFSVIGVLHFTRERQFRNIIPKCLPLRKTAVLVTGIFEILFGLALLIKRPSQCLKNTINLFLLAVFPANIYMAVKKLPLGDKQLPTWQLYLRLPMQFVLMGLIKKL

⊟Experimental data[edit | edit source]

experimentally validated: data available for COL, NCTC8325
protein localization: data available for COL
quantitative data / protein copy number per cell:
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

MicrobesOnline: SA1937 < pdp

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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