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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

organism: Staphylococcus aureus N315

locus tag: SA0863 [new locus tag: SA_RS04885 ]

pan locus tag^?: SAUPAN003176000

symbol: SA0863

pan gene symbol^?: —

synonym:
product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SA0863 [new locus tag: SA_RS04885 ]
symbol: SA0863
product: hypothetical protein
replicon: chromosome
strand: +
coordinates: 977820..978167
length: 348
essential: no DEG other strains

⊟Accession numbers[edit | edit source]

Gene ID: 1123680 NCBI
RefSeq: NP_374126 NCBI
BioCyc: see SA_RS04885
MicrobesOnline: 103152 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
ATGCGTTTATATATTAATGAAATTAAAATTAAAGATGACATACTTTATTGTTATACAGAA
GATTCTATTAAAGGATTATCTGAAGTAGGACAAATGCTCGTTGATAGTGATAATTATGCC
TTTGCGTATACATTAGATGATGGTAAAGCGTATGCTTATCTCATTTTCGTACAAGAAACA
TGGACGATGTTGCATGAAAACACGACTAAAAAAATTATTATCAATGATGAACTAGAATTG
ACTGAATTCCACCAAGAACTTACTTATATTTTAGACAACATAAAAGGGAATAATAATTAT
GGTAAGGAATTTGTTGCAACCGTTGAAGAAACATTCGACATTGAATAA
60
120
180
240
300
348

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SA0863 [new locus tag: SA_RS04885 ]
symbol: SA0863
description: hypothetical protein
length: 115
theoretical pI: 3.99629
theoretical MW: 13499.1
GRAVY: -0.322609

⊟Function[edit | edit source]

TIGRFAM:
TheSEED :
- UPF0738 protein YjbL
⊞PFAM:
no clan defined UPF0738; Family of unknown function (UPF0738) (PF19785; HMM-score: 107.3)
and 1 more
RNase_H (CL0219) TNP-like_RNaseH_N; TNP-like, RNase H N-terminal domain (PF21787; HMM-score: 13.9)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
⊞
DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.5121
- Cytoplasmic Membrane Score: 0.0862
- Cell wall & surface Score: 0.0002
- Extracellular Score: 0.4015
⊞
LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009131
- TAT(Tat/SPI): 0.000138
- LIPO(Sec/SPII): 0.000756
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 15926593 NCBI
RefSeq: NP_374126 NCBI
UniProt: Q7A6E2 UniProt

⊟Protein sequence[edit | edit source]

MRLYINEIKIKDDILYCYTEDSIKGLSEVGQMLVDSDNYAFAYTLDDGKAYAYLIFVQETWTMLHENTTKKIIINDELELTEFHQELTYILDNIKGNNNYGKEFVATVEETFDIE

⊟Experimental data[edit | edit source]

experimentally validated: data available for COL, NCTC8325
protein localization: data available for COL
quantitative data / protein copy number per cell: data available for COL
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

MicrobesOnline: SA0863 > SA0864 > ppnK > SA0866 > SA0867 > SA0868

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: data available for COL

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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