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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS10210 [old locus tag: SA1776 ]
  • pan locus tag?: SAUPAN005064000
  • symbol: SA_RS10210
  • pan gene symbol?: —
  • synonym:
  • product: phage portal protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS10210 [old locus tag: SA1776 ]
  • symbol: SA_RS10210
  • product: phage portal protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2028465..2029652
  • length: 1188
  • essential: no DEG

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2028465..2029652) NCBI
  • BioCyc: SA_RS10210 BioCyc
  • MicrobesOnline: see SA1776

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
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    ATGAGTATTCTAGAAAAGATATTTAAAACTAGGAAAGATATAACATATATGCTTGATTTA
    GATATGATAGAAGATCTATCACAACAAGCGTATGTGAAACGTTTAGCGATTGATAGTTGT
    ATTGAATTTGTTGCGCGAGCTGTCGCTCAAAGTCATTTTAAAGTATTGGAAGGTAATAGA
    ATTCAAAAGAATGATGTTTACTACAAGTTAAATATAAAACCAAATACTGACTTATCAAGC
    GATAGTTTTTGGCAACAAGTTATATATAAACTAATTTATGATAACGAGGTTTTAATCGTA
    GTAAGTGACAGCAAAGAATTACTTATCGCAGATAGCTTTTACAGAGAAGAGTACGCTTTG
    TATGATGATATATTCAAAGATGTAACGGTTAAAGATTATACTTATCAACGTACTTTCACA
    ATGCAAGAGGTCATATATTTAAAGTACAACAACAATAAAGTGACACACTTTGTAGAAAGT
    CTATTCGAAGATTACGGGAAAATATTCGGAAGAATGATAGGTGCACAATTAAAAAACTAT
    CAAATAAGAGGGATTTTGAAATCTGCCTCTAGCGCATATGACGAAAAGAATATAGAAAAA
    TTACAAGCGTTCACAAATAAATTATTCAATACTTTTAATAAAAATCAACTAGCAATCGCG
    CCTTTGATAGAAGGTTTTGATTATGAGGAATTATCTAATGGTGGTAAGAATAGTAACATG
    CCTTTTTCTGAATTGAGTGAGCTAATGAGAGATGCAATAAAAAATGTTGCGTTGATGATT
    GGTATACCTCCAGGTTTGATTTACGGAGAAACAGCTGATTTGGAAAAAAACACGCTTGTA
    TTTGAGAAGTTCTGTTTAACACCTTTATTAAAAAAGATTCAGAACGAATTAAACGCGAAA
    CTCATAACACAAAGCATGTATTTGAAAGATACAAGAATAGAAATTGTCGGTGTGAATAAA
    AAAGACCCACTTCAATATGCTGAAGCAATTGACAAACTTGTAAGTTCTGGTTCATTTACA
    AGGAATGAGGTGCGGATTATGTTAGGTGAAGAACCATCAGACAATCCTGAATTAGACGAA
    TACCTGATTACTAAAAACTACGAAAAAGCTAACAGTGGTGAAAATGATGAAAAAGAAAAA
    GATGAAAACACTTTGAAAGGTGGTGATGAAGATGAAAGCGGAGATTAA
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⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS10210 [old locus tag: SA1776 ]
  • symbol: SA_RS10210
  • description: phage portal protein
  • length: 395
  • theoretical pI: 4.54973
  • theoretical MW: 45519.4
  • GRAVY: -0.45443

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage portal protein, HK97 family (TIGR01537; HMM-score: 313.5)
  • TheSEED: see SA1776
  • PFAM:
    Phage_portal (CL0838) Phage_portal; Phage portal protein (PF04860; HMM-score: 115.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.4936
    • Cytoplasmic Membrane Score: 0.373
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.1327
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002221
    • TAT(Tat/SPI): 0.000263
    • LIPO(Sec/SPII): 0.000222
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSILEKIFKTRKDITYMLDLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIGAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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