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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS12880 [old locus tag: SA2242 ]
  • pan locus tag?: SAUPAN006009000
  • symbol: SA_RS12880
  • pan gene symbol?: —
  • synonym:
  • product: iron export ABC transporter permease subunit FetB

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS12880 [old locus tag: SA2242 ]
  • symbol: SA_RS12880
  • product: iron export ABC transporter permease subunit FetB
  • replicon: chromosome
  • strand: -
  • coordinates: 2519384..2520160
  • length: 777
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2519384..2520160) NCBI
  • BioCyc: SA_RS12880 BioCyc
  • MicrobesOnline: see SA2242

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAGTAATACGGCACTTGGATTGACGGCATTGCTTTTAGTCATTCCGATTATCATTTCA
    TATAAAGAAGGTTTACATATTATTAAAGATTTAATTGTTGCGACACTACGCGCAGTGGTG
    CAATTAATCATTTTGGGATTTTTGCTGCATTATATTTTTAAAATAAACGATAAATGGCTG
    CTTATTTTATGTGTATTGGTCATTATTATTAATGCATCATGGAATACAATTAGTCGAGCA
    TCACCAGTGATGCATCATGTGTTTTGGATATCATTTCTAGCTATCTTCATTGGAACAGCA
    TTACCACTTGCAGGTACTGTAGCTACAGGGGCAATTCATTTTACAGCCAATGAAGTTATA
    CCTATCGGCGGCATGCTTGCAAATAATGGCTTGATTGCAATTAATTTAGCTTACCAGAAT
    TTAGATCGTGCATTCGTACAAGATGGTACTAATATTGAATCTAAATTATCACTTGCAGCT
    ACACCTAAATTGGCTTCTAAAGGTGCAATACGTGAAAGTATTCGTTTAGCTATAGTGCCA
    ACAATTGATTCGGTTAAAACATATGGGCTTGTGTCGATTCCTGGTATGATGACAGGCTTA
    ATTATTGGTGGCGTACCACCTTTACAAGCGATTAAATTTCAATTGTTAGTCGTGTTTATT
    CATACAACTGCGACCATTATGTCTGCTTTGATTGCGACATATTTAAGCTATGGTCAATTT
    TTCAATGCAAGACATCAATTAGTAGCACGAAATACGGATGTTAAGAGTGAATCATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    777

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS12880 [old locus tag: SA2242 ]
  • symbol: SA_RS12880
  • description: iron export ABC transporter permease subunit FetB
  • length: 258
  • theoretical pI: 10.0039
  • theoretical MW: 27896.1
  • GRAVY: 0.825969

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved TIGR00245 family protein (TIGR00245; HMM-score: 219.7)
  • TheSEED: see SA2242
  • ⊞PFAM:
    no clan defined UPF0014; Uncharacterised protein family (UPF0014) (PF03649; HMM-score: 221)
    and 1 more
    Sm_multidrug_ex; Putative small multi-drug export protein (PF06695; HMM-score: 7.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9996
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0004
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002719
    • TAT(Tat/SPI): 0.000117
    • LIPO(Sec/SPII): 0.024769
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSNTALGLTALLLVIPIIISYKEGLHIIKDLIVATLRAVVQLIILGFLLHYIFKINDKWLLILCVLVIIINASWNTISRASPVMHHVFWISFLAIFIGTALPLAGTVATGAIHFTANEVIPIGGMLANNGLIAINLAYQNLDRAFVQDGTNIESKLSLAATPKLASKGAIRESIRLAIVPTIDSVKTYGLVSIPGMMTGLIIGGVPPLQAIKFQLLVVFIHTTATIMSALIATYLSYGQFFNARHQLVARNTDVKSES

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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