From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1173 [new locus tag: SA_RS06670 ]
  • pan locus tag?: SAUPAN003712000
  • symbol: SA1173
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1173 [new locus tag: SA_RS06670 ]
  • symbol: SA1173
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1335735..1336751
  • length: 1017
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATTAAAAAATTCATAGTAACTGTTGTTGCGTTTTTATCAATTATTATCATTGCGCCAATA
    ACAGAATTTAAACCATTCATTCATTTACAAAATGAAGTAAGACAATATATTGACATTCAC
    ATCAATAAAGAAACAATTTCTGCGGAAAATAAATTGGATACACCGAAGAAACAACAATTT
    GCCTTTAATAATATACAAATGAACATGTCGAAATCAGATGTTGAGAAAACATTAAATAAA
    CCAAAAAGAGTGACATTTAATGAATATGGTACGAAGTGGTATACGTATTATGATGACGAT
    TACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAAT
    CAAAATATAATCACTTCAAAATCAAAAATTAAATACAATACACCTAAATCGGTTGTAAGG
    CAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACAAAAT
    AATAAAGAATATGATGTTTTCCATAAAAATCACATTTATACGACGGTATTTTATGATAAG
    CATCGACGTAATAATGTAACAGCTGTTTTACAAGTAAGTGATGCTATGGAAAATAGATTA
    AAAGAACAATATGGAGCACCTTCGAAATCGCTTGCAGATAGTTTTGAACTACAAAATTTT
    GATTTAGTTAATGCTGAAAGAAAACAACATCAATTATCTACATTGAAGTATTCTAAACAG
    AATTCTGAAACTGCTCGTAAGCATAGTAAAGATATGGCCAAAAATCATTATTTTGATCAT
    ACAAATTTAAAAGGTCAATCACCATTTGATCGATTGAAAAAAGATGGTATTACATTTAAC
    TCAGCCGGAGAGAATTTAGCATATGGTCAAGTTAGTAGTATCTATGCACATCAAGGATTA
    ATGAATTCTATTGGTCACAGAAAAAATATTTTAAATGATACGTTTAAAATATTAGGTGTT
    GGTGTTGATTTTAATGATGAAAAACAACCTTTTTGGACAGAAAATTATACTGGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1017

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1173 [new locus tag: SA_RS06670 ]
  • symbol: SA1173
  • description: hypothetical protein
  • length: 338
  • theoretical pI: 9.82483
  • theoretical MW: 39523.4
  • GRAVY: -0.779882

⊟Function[edit | edit source]

  • TIGRFAM:
    uncharacterized protein, YkwD family (TIGR02909; HMM-score: 111.2)
  • TheSEED  :
    • FIG01108071: hypothetical protein
  • ⊞PFAM:
    no clan defined CAP_assoc_N; CAP-associated N-terminal (PF14504; HMM-score: 120.6)
    and 2 more
    CAP (CL0659) CAP; Cysteine-rich secretory protein family (PF00188; HMM-score: 64.7)
    no clan defined Phage_Gp111; Streptococcus thermophilus bacteriophage Gp111 protein (PF07410; HMM-score: 10.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0002
    • Cytoplasmic Membrane Score: 0.7575
    • Cell wall & surface Score: 0.0008
    • Extracellular Score: 0.2415
  • ⊞LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 7
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: Signal peptide SP(Sec/SPI) length 23 aa
    • SP(Sec/SPI): 0.605485
    • TAT(Tat/SPI): 0.000955
    • LIPO(Sec/SPII): 0.034027
    • Cleavage Site: CS pos: 23-24. TEF-KP. Pr: 0.1080
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKFIVTVVAFLSIIIIAPITEFKPFIHLQNEVRQYIDIHINKETISAENKLDTPKKQQFAFNNIQMNMSKSDVEKTLNKPKRVTFNEYGTKWYTYYDDDYNNFIMISYMKDKVNALYTNQNIITSKSKIKYNTPKSVVRQRLGEPETEIVKGRVRYEQNNKEYDVFHKNHIYTTVFYDKHRRNNVTAVLQVSDAMENRLKEQYGAPSKSLADSFELQNFDLVNAERKQHQLSTLKYSKQNSETARKHSKDMAKNHYFDHTNLKGQSPFDRLKKDGITFNSAGENLAYGQVSSIYAHQGLMNSIGHRKNILNDTFKILGVGVDFNDEKQPFWTENYTG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA1173&oldid=93890"