COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

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⊟Summary

• organism: Staphylococcus aureus Newman
locus tag: NWMN_1892 [new locus tag: NWMN_RS10890 ]
pan locus tag^?:
symbol: NWMN_1892
pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_1892 [new locus tag: NWMN_RS10890 ]
• symbol: NWMN_1892
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 2108068..2108472
• length: 405
• essential: unknown

⊟Accession numbers

• Gene ID: 5331156 NCBI
• RefSeq: YP_001332926 NCBI
• BioCyc:
• MicrobesOnline: 3707480 MicrobesOnline

⊟Phenotype

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⊟DNA sequence

• 1
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  ATGAGTGTGAAAGTGATAGGTGATAAAGCATTAGAAAGAGAATTAGAAAAACGTTTTGGC
  ATAAAAGAGATGGTAAAAGTTCAAGATAAGGCGTTAATAGCTGGTGCTAAGGTAATTGTT
  GAAGAAGTAAAAAAACAACTAAAGCCCTCAAAAGATACGGGAGCATTAATTAATGAGGTA
  AGTTTTAGTAAACCTGAATGGATAAACGGAAAACGTACAATTACTGTTCATTGGCGAGGT
  TCTAAAGACCGTTATAAAATCGTACATTTAATTGAATATGGACACGTTCAAAAAGGAACA
  GGTAAATTTATCAAACCTAAAGCTATGGGCGGTGTTAATAGAGCAATAAGACAAGGGCAA
  AATAAGTATTTTGAGACGCTAAAAAGGGAGTTGAAAAAATTGTGA
  60
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  405
  

⊟Protein

⊟General

• locus tag: NWMN_1892 [new locus tag: NWMN_RS10890 ]
• symbol: NWMN_1892
• description: hypothetical protein
• length: 134
• theoretical pI: 10.8584
• theoretical MW: 15316
• GRAVY: -0.585821

⊟Function

• TIGRFAM:
• TheSEED  :
  • Phage protein
• PFAM:
  Phage_tail (CL0348) HK97-gp10_like; Bacteriophage HK97-gp10, putative tail-component (PF04883; HMM-score: 21.9)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• ⊞DeepLocPro: Extracellular
  • Cytoplasmic Score: 0.3533
  • Cytoplasmic Membrane Score: 0.0481
  • Cell wall & surface Score: 0.0061
  • Extracellular Score: 0.5925
• ⊞LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• ⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.003684
  • TAT(Tat/SPI): 0.000882
  • LIPO(Sec/SPII): 0.000649
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 151222104 NCBI
• RefSeq: YP_001332926 NCBI
• UniProt: A0A0H3K9K4 UniProt

⊟Protein sequence

• MSVKVIGDKALERELEKRFGIKEMVKVQDKALIAGAKVIVEEVKKQLKPSKDTGALINEVSFSKPEWINGKRTITVHWRGSKDRYKIVHLIEYGHVQKGTGKFIKPKAMGGVNRAIRQGQNKYFETLKRELKKL

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: NWMN_1890 < NWMN_1891 < NWMN_1892 < NWMN_1893 < NWMN_1894 < NWMN_1895 < NWMN_1896 < NWMN_1897 < NWMN_1898 < NWMN_1899 < NWMN_1900

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications