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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1708 [new locus tag: NWMN_RS09595 ]
  • pan locus tag?: SAUPAN004570000
  • symbol: NWMN_1708
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1708 [new locus tag: NWMN_RS09595 ]
  • symbol: NWMN_1708
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1905173..1905739
  • length: 567
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAATACAAAATTTTTAGGTAAAACATTAGTAGCAAGTGCTTTAGTATTAACAACATTA
    GGAACAGGCTTACATTCTTCATACTTAGGATTAGATACAAATAAAGTTGTTAAAACGGCT
    AAAGCAGAAGAAAAAATGACAGATGGTCAATTATGGAAAAAAGTTAAAGATTCATTACAT
    GATTCTGATATTATTTTAAGTAACGAGTACGAAACAATCAACGTTACTTATTTATTAAGC
    AATGGATATTCTAGCAGCGTTTCTGCTCCTGGAAATGATGATGGAGGCCATCTAACACAA
    TCTATAGACTTTAAAGGATTAAAACAAATTGATTTAACTAAGGAAAATGTCTACGATGAC
    TTTAACAAAAAGCTAGATGCTAAAAATACATGGAATTCTCTAACCGAGAAGTTAAAAGGT
    CTTGGTTTACTACAAAATGGCCAAAAAGTATCTATTTATTCTTCAGATAGCTCTTCTCCA
    GTCTCGGGTAAAGTGGGAGAAGGAGTAACTAGTGGTGGCGAAAATACTCTAACTAAATGC
    TTCATCAACAAAATCACAATTGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    567

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1708 [new locus tag: NWMN_RS09595 ]
  • symbol: NWMN_1708
  • description: hypothetical protein
  • length: 188
  • theoretical pI: 6.79734
  • theoretical MW: 20301.7
  • GRAVY: -0.395213

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • probable beta-lactamase
  • PFAM:
    no clan defined DUF4888; Domain of unknown function (DUF4888) (PF16229; HMM-score: 312.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.0005
    • Cell wall & surface Score: 0.0023
    • Extracellular Score: 0.9972
  • ⊞LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: Signal peptide SP(Sec/SPI) length 42 aa
    • SP(Sec/SPI): 0.79902
    • TAT(Tat/SPI): 0.021448
    • LIPO(Sec/SPII): 0.045217
    • Cleavage Site: CS pos: 42-43. AKA-EE. Pr: 0.3268
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNTKFLGKTLVASALVLTTLGTGLHSSYLGLDTNKVVKTAKAEEKMTDGQLWKKVKDSLHDSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENVYDDFNKKLDAKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSSSPVSGKVGEGVTSGGENTLTKCFINKITID

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • ⊞regulators: CcpA regulon, SaeR (activation) regulon

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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