⊟Summary[edit | edit source]

PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus COL
locus tag: SACOL_RS02015 [old locus tag: SACOL0400 ]
pan locus tag^?: SAUPAN001863000
symbol: SACOL_RS02015
pan gene symbol^?: ulaA
• synonym:
• product: PTS ascorbate transporter subunit IIC

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SACOL_RS02015 [old locus tag: SACOL0400 ]
• symbol: SACOL_RS02015
• product: PTS ascorbate transporter subunit IIC
• replicon: chromosome
• strand: -
• coordinates: 406586..407932
• length: 1347
• essential: unknown other strains

⊟Accession numbers

• Location: NC_002951 (406586..407932) NCBI
• BioCyc: SACOL_RS02015 BioCyc
• MicrobesOnline: see SACOL0400

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  1321
  
  ATGCAAGCAATCCTTAATTTTATAGTCGATATTTTAAGTCAACCAGCCATTCTTGTTGCA
  CTGATTGCCTTTATAGGTTTAATCGTTCAGAAAAAACCTGCCGCAACGATCACTTCAGGA
  ACCATTAAAACGATATTAGGCTTCTTAATTTTAAGTGCAGGTGCTGATGTCGTCGTTCGA
  TCTCTTGAACCATTCGGCAAAATATTCCAACACGCATTTGGTGTGCAAGGTATCTTACCT
  AACAACGAAGCTATCGTCTCACTAGCCTTAAAAGATTTTGGAACAACAGCTGCACTCATC
  ATGGTCTGTGGCATGATTGTTAATATTTTAATTGCCCGCTTCACTAATTTAAAATATATC
  TTTTTAACAGGTCATCATACATTTTACATGGCTGCGTTTTTAGCAATCATTTTAACAGTC
  AGTCATATTAAAGGCTGGCTAACGATTGTTATCGGCGCACTCGTATTAGGATTAATCATG
  GCAGTATTACCTGCATTACTCCAACCTACGATGCGAAAAATTACAGGGAATGACCAAGTA
  GCTTTAGGTCATTTTGGCTCAATCAGTTACTTTGCCGCAGGTGCTGTAGGTCAATTATTC
  AAAGGTAAGTCTAAATCAACGGAAGAGATTAAATTTCCAAAAGGCTTAAGTTTCTTACGA
  GAAAGTACAATTAGTATCTCGATTACGATGGCATTACTTTACTTCATCGCATGCTTATTT
  GCGGGCGTTAGTTATGTACACGAATCTATTAGTGATGGTCAAAACTTTATTGTCTTTTCA
  TTAATTCAAGGTGTGACATTTGCTGCTGGTGTATTTATTATTTTAACGGGCGTTCGTTTA
  ATCTTAGCTGAAATCGTCCCAGCATTTAAAGGAATTTCTGAAAAGCTTGTACCAAATTCT
  AAACCTGCATTAGACTGCCCTATTGTGTTCCCTTATGCACAAAATGCAGTATTAATTGGA
  TTCTTTGTCAGCTTTATTACAGGTGTCATCGGTATGTTTATCTTATTCTTATTTGGTGGC
  GTCGTCATTTTACCTGGCGTAGTTGCACACTTCTTCTTAGGTGCAACGGCTGCTGTATTC
  GGTAATGCAAGAGGCGGTATTAAAGGTGCTATTGCTGGCGCCGCTCTAAATGGTATCCTA
  ATCACGTTTTTACCATTATTATTCTTGCCATTTTTAGGCGAATTAGGTGGTGCTGCAACA
  ACATTCTCAGATACAGACTTTTTAGCTGTCGGTATCGTGTTCGGTAACGCAGTAAAATAT
  ATGGGATTATTTGGTGCGATTCTATTTATTATTATCGTAGGTGCGACAACAATTTTATTA
  AAAGGCCGTCAAAAAGAACAGCAATAG
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⊟Protein

⊟General

• locus tag: SACOL_RS02015 [old locus tag: SACOL0400 ]
• symbol: SACOL_RS02015
• description: PTS ascorbate transporter subunit IIC
• length: 448
• theoretical pI: 9.92282
• theoretical MW: 47426.5
• GRAVY: 1.05558

⊟Function

• TIGRFAM:
• TheSEED: see SACOL0400
• PFAM:
  no clan defined EIIC-GAT; PTS system sugar-specific permease component (PF03611; HMM-score: 494.1)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞⊞PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 12
• ⊞⊞DeepLocPro: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 0.9992
  • Cell wall & surface Score: 0
  • Extracellular Score: 0.0008
• LocateP:
• ⊞⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.036734
  • TAT(Tat/SPI): 0.000833
  • LIPO(Sec/SPII): 0.004989
• predicted transmembrane helices (TMHMM): 10

⊟Accession numbers

• GI: 447070704 NCBI
• RefSeq: WP_001147960 NCBI
• UniProt: see SACOL0400

⊟Protein sequence

• MQAILNFIVDILSQPAILVALIAFIGLIVQKKPAATITSGTIKTILGFLILSAGADVVVRSLEPFGKIFQHAFGVQGILPNNEAIVSLALKDFGTTAALIMVCGMIVNILIARFTNLKYIFLTGHHTFYMAAFLAIILTVSHIKGWLTIVIGALVLGLIMAVLPALLQPTMRKITGNDQVALGHFGSISYFAAGAVGQLFKGKSKSTEEIKFPKGLSFLRESTISISITMALLYFIACLFAGVSYVHESISDGQNFIVFSLIQGVTFAAGVFIILTGVRLILAEIVPAFKGISEKLVPNSKPALDCPIVFPYAQNAVLIGFFVSFITGVIGMFILFLFGGVVILPGVVAHFFLGATAAVFGNARGGIKGAIAGAALNGILITFLPLLFLPFLGELGGAATTFSDTDFLAVGIVFGNAVKYMGLFGAILFIIIVGATTILLKGRQKEQQ

⊟Experimental data

• experimentally validated: data available for NCTC8325
• protein localization: see SACOL0400
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications