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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

organism: Staphylococcus aureus N315

locus tag: SA1698 [new locus tag: SA_RS09745 ]

pan locus tag^?: SAUPAN004897000

symbol: SA1698

pan gene symbol^?: —

synonym:
product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SA1698 [new locus tag: SA_RS09745 ]
symbol: SA1698
product: hypothetical protein
replicon: chromosome
strand: +
coordinates: 1944859..1945134
length: 276
essential: no DEG other strains

⊟Accession numbers[edit | edit source]

Gene ID: 1124582 NCBI
RefSeq: NP_374989 NCBI
BioCyc: see SA_RS09745
MicrobesOnline: 104015 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
ATGGAAAATAAATTTGTTCCTGGTATTTTAATTGGTGCCGTAATTGGTGGTGCAATTAGT
TTAGCTGATAAATCTACACGTCAAGCTTTAGTTCAATCAGTTAAAGATGCAAAAAATGGT
AACCGCACTCGTAAGCCTTCTAAAGTCAGCAAGATTAAAGACGAAGTTTTATACTGGAAA
GATGTTGTTGAAGAAATTCGTCGTAATAATCCTGAATTAGAACGTTCATTAAAGGATGCG
AAAGAAACATTTGTTAATAGAAAAAATCAACGCTAA
60
120
180
240
276

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SA1698 [new locus tag: SA_RS09745 ]
symbol: SA1698
description: hypothetical protein
length: 91
theoretical pI: 10.8021
theoretical MW: 10321.8
GRAVY: -0.767033

⊟Function[edit | edit source]

TIGRFAM:
TheSEED :
- Hypothetical protein YfkI
CBSS-176280.1.peg.1561 FIG010063: hypothetical protein
⊞PFAM:
no clan defined LSU; Response to Low Sulfur (LSU) family (PF24980; HMM-score: 14.1)
and 1 more
YtxH; YtxH-like protein (PF12732; HMM-score: 9.5)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
⊞
DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0299
- Cytoplasmic Membrane Score: 0.8529
- Cell wall & surface Score: 0.07
- Extracellular Score: 0.0472
⊞
LocateP: N-terminally anchored (No CS)
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: 0
- N-terminally Anchored Score: 7
- Predicted Cleavage Site: No CleavageSite
⊞
SignalP: Signal peptide SP(Sec/SPI) length 29 aa
- SP(Sec/SPI): 0.490585
- TAT(Tat/SPI): 0.043363
- LIPO(Sec/SPII): 0.076147
- Cleavage Site: CS pos: 29-30. RQA-LV. Pr: 0.0985
predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

GI: 15927456 NCBI
RefSeq: NP_374989 NCBI
UniProt: A0A0H3JN58 UniProt

⊟Protein sequence[edit | edit source]

MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR

⊟Experimental data[edit | edit source]

experimentally validated: data available for COL, NCTC8325
protein localization: data available for COL
quantitative data / protein copy number per cell:
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

MicrobesOnline: SA1697 > SA1698

⊟Regulation[edit | edit source]

data available for NCTC8325, Newman

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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