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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1036 [new locus tag: NWMN_RS05865 ]
  • pan locus tag?: SAUPAN001703000
  • symbol: NWMN_1036
  • pan gene symbol?: —
  • synonym:
  • product: phage tail fiber

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1036 [new locus tag: NWMN_RS05865 ]
  • symbol: NWMN_1036
  • product: phage tail fiber
  • replicon: chromosome
  • strand: +
  • coordinates: 1137855..1139027
  • length: 1173
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGTACAAAATAAAAGATGTTGAAACGAGAATAAAAAATGATGGTGTTGACTTAGGTGAC
    ATTGGCTGTCGATTTTACACTGAAGATGAAAATACAGCATCTATAAGAATAGGTATCAAT
    GACAAACAAGGTCGTATCGATCTAAAAGCACATGGCTTAACACCTAGATTACATTTGTTT
    ATGGAAGATGGCTCTATATTCAAAAATGAGCCCCTTATTATCGACGATGTTGTAAAAGGG
    TTCCTTACCTACAAGATACCTAAAAAGGTTATCAAACACGCTGGTTATGTTCGTTGTAAG
    CTGTTTTTAGAGAAAGAAGAAGAAAAAATACATGTCGCGAACTTTTCTTTCAATATCGTT
    GATAGTGGCATTGAATCTGCTGTAGCAAAAGAAATCGATGTTAAATTGGTAGATGATGCT
    ATTACGAGAATCTTAAAAGATAACGCGACAGATTTATTGAGCAAAGACTTTAAAGAGAAA
    ATAGATAAAGATGTCATTTCTTACATTGAAAAGAATGAAAGTAGATTTAAAGGTGTGAAA
    GGTGATAAAGGCGAACCGGGACAACCTGGTGCAAAAGGTGAGACAGGTAAAAAAGGAGAA
    CAAGGCGCACCCGGTAAAAACGGTACTGTAGTATCAATCAATCCTGACACTAAAATGTGG
    CAAATTGATGGTAAAGATACAGATATCAAAGCAGAACCTGAGATATTGGACAAAATCAAT
    ATCGCAAATGTTGAAGGGTTAGAAAATAAATTGCAAGAAGTTGAAAAAATCAAAGATACA
    ACTCTCAACGACTCTAAAACGTATACGGATTCAAAAATTGCTGAACTAGTTGATAGCGCG
    CCTGAATCTATGAATACATTAAGAGAATTAGCAGAAGCAATACAAAACAACTCTATTTCA
    GAAAGTGTATTGCAACAGATTGGCTCAAAAGTTAGTACAGAAGATTTTGAGAAATTCAAA
    CAAACACTAAATGATTTATATGCTCCAAAAAATCATAATCATGACGAGCGGTATGTTTTG
    TCATCTCAAGCTTTTACTAAACAACAAGCGGATAATTTATATCAACTAAAAAGCGCATCT
    CAACCGACGGTTAAAATTTGGACAGGAACAGAAAATGAATATAACTATATATATCAAAAA
    GACCCGAATACGTTGTATTTAATTAAAGGGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1173

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1036 [new locus tag: NWMN_RS05865 ]
  • symbol: NWMN_1036
  • description: phage tail fiber
  • length: 390
  • theoretical pI: 5.17785
  • theoretical MW: 43873.2
  • GRAVY: -0.671795

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Phage phi 11 orf50 protein homolog
    Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Phage tail fiber proteins  Tail fiber protein [SA bacteriophages 11, Mu50B]
  • ⊞PFAM:
    E-set (CL0159) BppU_N; BppU N-terminal domain (PF10651; HMM-score: 125.1)
    and 5 more
    no clan defined Collagen; Collagen triple helix repeat (20 copies) (PF01391; HMM-score: 25.7)
    Phage_tail_C; Phage tail tip domain (PF24243; HMM-score: 22.1)
    Spectrin (CL0743) EPS8_2nd; EPS8 spectrin-like domain (PF22975; HMM-score: 10.9)
    RNase_H (CL0219) RNase_HII; Ribonuclease HII (PF01351; HMM-score: 9)
    C1q_TNF (CL0100) PRD1_P5_C; Bacteriophage PRD1, spike protein P5, C-terminal (PF08949; HMM-score: 7.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cell wall & surface
    • Cytoplasmic Score: 0.1976
    • Cytoplasmic Membrane Score: 0.0017
    • Cell wall & surface Score: 0.634
    • Extracellular Score: 0.1667
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006029
    • TAT(Tat/SPI): 0.000458
    • LIPO(Sec/SPII): 0.001929
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYKIKDVETRIKNDGVDLGDIGCRFYTEDENTASIRIGINDKQGRIDLKAHGLTPRLHLFMEDGSIFKNEPLIIDDVVKGFLTYKIPKKVIKHAGYVRCKLFLEKEEEKIHVANFSFNIVDSGIESAVAKEIDVKLVDDAITRILKDNATDLLSKDFKEKIDKDVISYIEKNESRFKGVKGDKGEPGQPGAKGETGKKGEQGAPGKNGTVVSINPDTKMWQIDGKDTDIKAEPEILDKINIANVEGLENKLQEVEKIKDTTLNDSKTYTDSKIAELVDSAPESMNTLRELAEAIQNNSISESVLQQIGSKVSTEDFEKFKQTLNDLYAPKNHNHDERYVLSSQAFTKQQADNLYQLKSASQPTVKIWTGTENEYNYIYQKDPNTLYLIKG

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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