From AureoWiki

Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus N315

locus tag: SA_RS06930 [old locus tag: SA1220 ]

pan locus tag^?: SAUPAN003796000

symbol: SA_RS06930

pan gene symbol^?: pstC

synonym:
product: phosphate ABC transporter permease subunit PstC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SA_RS06930 [old locus tag: SA1220 ]
symbol: SA_RS06930
product: phosphate ABC transporter permease subunit PstC
replicon: chromosome
strand: -
coordinates: 1392956..1393882
length: 927
essential: no DEG other strains

⊟Accession numbers[edit | edit source]

Location: NC_002745 (1392956..1393882) NCBI
BioCyc: SA_RS06930 BioCyc
MicrobesOnline: see SA1220

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
ATGACTTCATCTACTAATGTTAAAGCTTTAATCGAAAAAAATATTAATAAAAAAGGGAAG
CATAATGACAAAATTATACCAGTTATTTTAGCCGCAATTTCAGCGATTTCCATTTTAACA
ACACTAGGTATATTAATCACATTGCTTTTAGAAACCATCACTTTTTTCACCAGAATTCCA
ATAACTGAATTTCTATTTTCTACTACTTGGAATCCTACCGGTTCAGACCCTAAGTTTGGT
ATCTGGGCATTGATAATAGGGACTTTAAAAATCACAGTTATTGCGACTATATTTGCAGTT
CCAGTCGGGCTTGGTGCAGCAATTTATTTAAGTGAATATGCAAGTGACCGTGCACGACGC
ATAATTAAACCGATATTAGAAATTTTAGCAGGAATACCAACAATTGTGTTTGGTTTCTTT
GCATTAACCTTTGTTACACCAGTATTAAGATCTTTCATATCAGGTCTTGGAGAGTTTAAT
GCTATAAGTCCCGGCTTAGTTGTCGGTATTATGATTGTCCCTCTCATCACAAGTTTGAGT
GAGGATGCAATGGCATCTGTACCAAATAAAATTCGAGAAGGTGCCTATGGACTTGGAGCA
ACTAAATTAGAAGTAGCAACTAAAGTCGTACTTCCCGCAGCAACATCAGGTATTGTAGCT
TCAATCGTTCTCGCGATTTCAAGAGCAATTGGAGAAACGATGATTGTATCATTAGCGGCA
GGTAGTTCGCCAACAGCTTCATTAAGTTTAACAAGTTCGATTCAAACAATGACTGGATAT
ATTGTTGAGATAGCGACAGGTGATGCAACATTTGGATCAAATATTTATTACAGTATTTAT
GCTGTAGGGTTCACACTATTTATCTTTACCTTAATCATGAATTTACTTTCTCAGTGGATT
TCTAAGCGTTTTAGGGAGGAGTATTAA
60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
927

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SA_RS06930 [old locus tag: SA1220 ]
symbol: SA_RS06930
description: phosphate ABC transporter permease subunit PstC
length: 308
theoretical pI: 9.67025
theoretical MW: 32892.6
GRAVY: 0.772727

⊟Function[edit | edit source]

⊞TIGRFAM:
Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstC (TIGR02138; HMM-score: 265.8)
and 9 more
Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstA (TIGR00974; HMM-score: 177.6)
Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 55.6)
NifC-like ABC-type porter (TIGR01581; HMM-score: 50.3)
choline ABC transporter, permease protein (TIGR03416; HMM-score: 34.4)
Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysT (TIGR02139; HMM-score: 33.8)
Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein (TIGR00969; HMM-score: 30.6)
2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 20.5)
2-aminoethylphosphonate ABC transport system, membrane component PhnV (TIGR03255; HMM-score: 20.3)
Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysW (TIGR02140; HMM-score: 17.1)
TheSEED: see SA1220
⊞PFAM:
BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 74.2)
and 1 more
no clan defined DUF4605; Domain of unknown function (DUF4605) (PF15378; HMM-score: 11.8)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
⊞
DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9999
- Cell wall & surface Score: 0
- Extracellular Score: 0.0001
LocateP:
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001254
- TAT(Tat/SPI): 0.000093
- LIPO(Sec/SPII): 0.001115
predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

GI: 446126764 NCBI
RefSeq: WP_000204619 NCBI
UniProt: see SA1220

⊟Protein sequence[edit | edit source]

MTSSTNVKALIEKNINKKGKHNDKIIPVILAAISAISILTTLGILITLLLETITFFTRIPITEFLFSTTWNPTGSDPKFGIWALIIGTLKITVIATIFAVPVGLGAAIYLSEYASDRARRIIKPILEILAGIPTIVFGFFALTFVTPVLRSFISGLGEFNAISPGLVVGIMIVPLITSLSEDAMASVPNKIREGAYGLGATKLEVATKVVLPAATSGIVASIVLAISRAIGETMIVSLAAGSSPTASLSLTSSIQTMTGYIVEIATGDATFGSNIYYSIYAVGFTLFIFTLIMNLLSQWISKRFREEY

⊟Experimental data[edit | edit source]

experimentally validated:
protein localization:
quantitative data / protein copy number per cell:
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA_RS06930&oldid=97343"