From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2479 [new locus tag: SA_RS14185 ]
  • pan locus tag?: SAUPAN006443000
  • symbol: SA2479
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2479 [new locus tag: SA_RS14185 ]
  • symbol: SA2479
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2790802..2791317
  • length: 516
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGACTAACTTTACTTTTGATGGTGCACACAGTAGTTTAGAATTCCAAATTAAACATTTA
    ATGGTTTCTAAAGTGAAAGGTTCATTTGATCAATTTGATGTAGCTGTTGAAGGAGATATT
    AATGACTTCAGTACTTTGAAAGCTACTGCAACAATTATTCCAAGCTCAATTAACACTAAA
    AACGAAGCACGTGATAACCACTTAAAATCTGGTGATTTCTTTGGTACTGATGAATTTGAT
    AAAATCACGTTTGAAACAAAATCAGTTACTGAAAACAAAGTTGTTGGTGATTTAACAATT
    AAAGGTATCACTAACGAAGAAACATTCGACGTTGAATTCAACGGAGTAAGTAAGAATCCT
    ATGGATGGTTCTCAAGTAACAGGTGTTATTGTTACTGGTACAATCAATAGAGAAAACTAC
    GGCATTAACTTTAACCAAGCACTTGAAACTGGTGGCGTAATGCTAGGCAAAGATGTTAAA
    TTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    516

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2479 [new locus tag: SA_RS14185 ]
  • symbol: SA2479
  • description: hypothetical protein
  • length: 171
  • theoretical pI: 4.31893
  • theoretical MW: 18697.6
  • GRAVY: -0.312865

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Polyisoprenoid-binding periplasmic protein YceI
  • ⊞PFAM:
    no clan defined YceI; YceI-like domain (PF04264; HMM-score: 134.9)
    and 2 more
    E-set (CL0159) DUF7498; Domain of unknown function (DUF7498) (PF24328; HMM-score: 15.3)
    DNA_clamp (CL0060) PCNA_N; Proliferating cell nuclear antigen, N-terminal domain (PF00705; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8294
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.1704
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003464
    • TAT(Tat/SPI): 0.000704
    • LIPO(Sec/SPII): 0.000533
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTNFTFDGAHSSLEFQIKHLMVSKVKGSFDQFDVAVEGDINDFSTLKATATIIPSSINTKNEARDNHLKSGDFFGTDEFDKITFETKSVTENKVVGDLTIKGITNEETFDVEFNGVSKNPMDGSQVTGVIVTGTINRENYGINFNQALETGGVMLGKDVKFEASAEFSISE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA2479&oldid=81536"