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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS04435 [old locus tag: SACOL0864 ]
  • pan locus tag?: SAUPAN002805000
  • symbol: SACOL_RS04435
  • pan gene symbol?: lnsA
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS04435 [old locus tag: SACOL0864 ]
  • symbol: SACOL_RS04435
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 890101..890670
  • length: 570
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (890101..890670) NCBI
  • BioCyc: SACOL_RS04435 BioCyc
  • MicrobesOnline: see SACOL0864

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
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    541
    GTGAACTATATTAAACGAACGATAATTTTACTTATATTATTCGTTGTCGTATCCCCAATA
    AACTCACCAAAAACAATTGCAGATAATAAGTATTCAGAAATTCAAGATGACAAATTCCAA
    TTACAACCTGGTGATATTATTGTTACAAAAGGCCCTGTCATGTGGGGATTTTTTGGTCAT
    TGTAGTATCGCGATTGATGATAAAACGATTTTACAAATTGAGGGGCCTGGCGACAAACCA
    ACTACACAATCCTTCGAATCTTTTAAATATAATTATGCAAGTGGCAAAAATGATTGGATG
    AAAGTTTATCGTTGCAGCTATCCTGGTGCAGGTAAAAAAGCGGCTGAATGGGTTAAGAAA
    AACTATGAGAATACAAATCATCGTTATCTAGTTACATTAAATTTGAACAGCAAAAAATTT
    ACGTATTGTACTAAAATTATCTACCAAGCTTATAAATTTGGTGTAAGTGAAAAATCAGTT
    AAAAGTTATGGACTACATATTATTTCACCCTATGCAATTAAAGATAATTTTATAGATCCA
    TACAAACTAAGGCTTGTTAAAGCTTATTAA
    60
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    570

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS04435 [old locus tag: SACOL0864 ]
  • symbol: SACOL_RS04435
  • description: hypothetical protein
  • length: 189
  • theoretical pI: 9.80772
  • theoretical MW: 21755
  • GRAVY: -0.333862

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL0864
  • PFAM:
    Peptidase_CA (CL0125) Peptidase_C92; Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family (PF05708; HMM-score: 14.7)
    Transporter (CL0375) SUR7; SUR7/PalI family (PF06687; HMM-score: 12.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cell wall & surface Score: 0
    • Extracellular Score: 1
  • LocateP:
  • ⊞SignalP: Signal peptide SP(Sec/SPI) length 27 aa
    • SP(Sec/SPI): 0.931027
    • TAT(Tat/SPI): 0.007444
    • LIPO(Sec/SPII): 0.018888
    • Cleavage Site: CS pos: 27-28. TIA-DN. Pr: 0.8438
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNYIKRTIILLILFVVVSPINSPKTIADNKYSEIQDDKFQLQPGDIIVTKGPVMWGFFGHCSIAIDDKTILQIEGPGDKPTTQSFESFKYNYASGKNDWMKVYRCSYPGAGKKAAEWVKKNYENTNHRYLVTLNLNSKKFTYCTKIIYQAYKFGVSEKSVKSYGLHIISPYAIKDNFIDPYKLRLVKAY

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: see SACOL0864
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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